Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.83■□□□□ 0.6
TRIM13O60858 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.83■□□□□ 0.6
TRIM13O60858 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
TRIM13O60858 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM13O60858 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM13O60858 KRT18P16-201ENST00000510337 1294 ntBASIC18.82■□□□□ 0.6
TRIM13O60858 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.82■□□□□ 0.6
TRIM13O60858 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM13O60858 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM13O60858 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRIM13O60858 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRIM13O60858 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 BICD1-207ENST00000551848 1962 ntBASIC18.82■□□□□ 0.6
TRIM13O60858 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM13O60858 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM13O60858 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRIM13O60858 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM13O60858 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM13O60858 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM13O60858 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.82■□□□□ 0.6
TRIM13O60858 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM13O60858 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM13O60858 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM13O60858 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
TRIM13O60858 LETM1P2-201ENST00000597330 2178 ntBASIC18.81■□□□□ 0.6
TRIM13O60858 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
TRIM13O60858 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 AC026185.1-201ENST00000445748 174 ntBASIC18.81■□□□□ 0.6
TRIM13O60858 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM13O60858 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM13O60858 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM13O60858 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM13O60858 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.81■□□□□ 0.6
TRIM13O60858 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM13O60858 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM13O60858 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRIM13O60858 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRIM13O60858 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
TRIM13O60858 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRIM13O60858 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 MIR663A-201ENST00000385250 93 ntBASIC18.8■□□□□ 0.6
TRIM13O60858 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM13O60858 TUBB8P6-201ENST00000436895 1288 ntBASIC18.8■□□□□ 0.6
TRIM13O60858 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM13O60858 AC091874.3-201ENST00000512672 1195 ntBASIC18.8■□□□□ 0.6
TRIM13O60858 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM13O60858 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM13O60858 AC092118.2-201ENST00000613495 667 ntBASIC18.8■□□□□ 0.6
TRIM13O60858 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM13O60858 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM13O60858 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM13O60858 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM13O60858 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRIM13O60858 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
TRIM13O60858 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM13O60858 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
TRIM13O60858 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM13O60858 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM13O60858 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms