Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.48■□□□□ 0.71
HOXC11O43248 AL121956.5-201ENST00000625261 221 ntBASIC19.48■□□□□ 0.71
HOXC11O43248 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC11O43248 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HOXC11O43248 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC11O43248 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC11O43248 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC11O43248 AC007952.6-201ENST00000573168 2673 ntBASIC19.48■□□□□ 0.71
HOXC11O43248 AC003957.1-201ENST00000625108 2673 ntBASIC19.48■□□□□ 0.71
HOXC11O43248 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HOXC11O43248 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 AL359075.1-203ENST00000462729 1002 ntBASIC19.47■□□□□ 0.71
HOXC11O43248 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.47■□□□□ 0.71
HOXC11O43248 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.47■□□□□ 0.71
HOXC11O43248 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
HOXC11O43248 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.47■□□□□ 0.71
HOXC11O43248 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC11O43248 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC11O43248 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC11O43248 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC11O43248 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC11O43248 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC11O43248 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC11O43248 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
HOXC11O43248 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXC11O43248 AL671277.2-201ENST00000458060 996 ntBASIC19.46■□□□□ 0.71
HOXC11O43248 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXC11O43248 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC11O43248 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXC11O43248 CR769767.2-201ENST00000622735 460 ntBASIC19.46■□□□□ 0.71
HOXC11O43248 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
HOXC11O43248 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC11O43248 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC11O43248 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC11O43248 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC11O43248 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC11O43248 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC11O43248 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
HOXC11O43248 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC11O43248 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.45■□□□□ 0.7
HOXC11O43248 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 KRT18P38-201ENST00000449496 1282 ntBASIC19.45■□□□□ 0.7
HOXC11O43248 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.45■□□□□ 0.7
HOXC11O43248 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC11O43248 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.45■□□□□ 0.7
HOXC11O43248 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
HOXC11O43248 AP000550.4-202ENST00000639755 178 ntBASIC19.45■□□□□ 0.7
HOXC11O43248 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.45■□□□□ 0.7
HOXC11O43248 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC11O43248 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC11O43248 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC11O43248 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC11O43248 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXC11O43248 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC11O43248 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC11O43248 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.44■□□□□ 0.7
HOXC11O43248 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXC11O43248 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC11O43248 UPK3BP1-201ENST00000428678 509 ntBASIC19.44■□□□□ 0.7
HOXC11O43248 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.44■□□□□ 0.7
HOXC11O43248 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC11O43248 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HOXC11O43248 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXC11O43248 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC11O43248 FAM86EP-206ENST00000510506 987 ntBASIC19.44■□□□□ 0.7
HOXC11O43248 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC11O43248 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC11O43248 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC11O43248 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC11O43248 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
HOXC11O43248 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms