Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC15.38■□□□□ 0.05
HMGB3O15347 AC105265.2-201ENST00000467189 838 ntBASIC15.38■□□□□ 0.05
HMGB3O15347 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB3O15347 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 FGF8-207ENST00000618991 856 ntTSL 3 BASIC15.38■□□□□ 0.05
HMGB3O15347 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB3O15347 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
HMGB3O15347 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGB3O15347 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGB3O15347 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
HMGB3O15347 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGB3O15347 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGB3O15347 GRAMD4P4-201ENST00000613563 1115 ntBASIC15.37■□□□□ 0.05
HMGB3O15347 AL355001.2-201ENST00000620617 1191 ntBASIC15.37■□□□□ 0.05
HMGB3O15347 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
HMGB3O15347 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 WIZP1-201ENST00000531444 2299 ntBASIC15.37■□□□□ 0.05
HMGB3O15347 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
HMGB3O15347 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
HMGB3O15347 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB3O15347 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGB3O15347 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HMGB3O15347 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 AC079598.2-202ENST00000546624 1451 ntBASIC15.36■□□□□ 0.05
HMGB3O15347 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGB3O15347 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC15.36■□□□□ 0.05
HMGB3O15347 AL356652.1-201ENST00000615962 565 ntBASIC15.36■□□□□ 0.05
HMGB3O15347 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
HMGB3O15347 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
HMGB3O15347 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC15.36■□□□□ 0.05
HMGB3O15347 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
HMGB3O15347 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGB3O15347 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms