Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGN4O00479 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGN4O00479 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 KRASP1-201ENST00000407852 552 ntBASIC17.79■□□□□ 0.44
HMGN4O00479 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGN4O00479 AC239809.2-201ENST00000415381 517 ntBASIC17.79■□□□□ 0.44
HMGN4O00479 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
HMGN4O00479 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGN4O00479 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGN4O00479 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGN4O00479 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.79■□□□□ 0.44
HMGN4O00479 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.79■□□□□ 0.44
HMGN4O00479 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGN4O00479 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGN4O00479 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGN4O00479 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HMGN4O00479 NEFHP1-201ENST00000412845 2629 ntBASIC17.79■□□□□ 0.44
HMGN4O00479 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGN4O00479 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HMGN4O00479 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
HMGN4O00479 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
HMGN4O00479 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGN4O00479 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.78■□□□□ 0.44
HMGN4O00479 TSPY23P-201ENST00000440136 739 ntBASIC17.78■□□□□ 0.44
HMGN4O00479 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGN4O00479 KRT16P5-201ENST00000455284 522 ntBASIC17.78■□□□□ 0.44
HMGN4O00479 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGN4O00479 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGN4O00479 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGN4O00479 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HMGN4O00479 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGN4O00479 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGN4O00479 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGN4O00479 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGN4O00479 KRT8P41-201ENST00000533985 1514 ntBASIC17.77■□□□□ 0.44
HMGN4O00479 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGN4O00479 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGN4O00479 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
HMGN4O00479 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.77■□□□□ 0.44
HMGN4O00479 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGN4O00479 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGN4O00479 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGN4O00479 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGN4O00479 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGN4O00479 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HMGN4O00479 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGN4O00479 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGN4O00479 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGN4O00479 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGN4O00479 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGN4O00479 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGN4O00479 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
HMGN4O00479 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.77■□□□□ 0.43
HMGN4O00479 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
HMGN4O00479 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
HMGN4O00479 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGN4O00479 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms