Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 C1QL1P1-201ENST00000568105 661 ntBASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.44■□□□□ 0.7
TCRBV7S3A2A0A539 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 MTDHP1-201ENST00000605323 784 ntBASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV7S3A2A0A539 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 TSPY23P-201ENST00000440136 739 ntBASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 RNA5SP413-201ENST00000516373 109 ntBASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 PRKY-204ENST00000533551 1019 ntBASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 AL160286.2-201ENST00000567150 934 ntBASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV7S3A2A0A539 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms