Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
KDM3AQ9Y4C1 MEST-211ENST00000437945 1455 ntTSL 5 BASIC28.77■■■□□ 2.2
KDM3AQ9Y4C1 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.77■■■□□ 2.2
KDM3AQ9Y4C1 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
KDM3AQ9Y4C1 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.77■■■□□ 2.2
KDM3AQ9Y4C1 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC28.77■■■□□ 2.2
KDM3AQ9Y4C1 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
KDM3AQ9Y4C1 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.76■■■□□ 2.19
KDM3AQ9Y4C1 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.76■■■□□ 2.19
KDM3AQ9Y4C1 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
KDM3AQ9Y4C1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
KDM3AQ9Y4C1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC28.75■■■□□ 2.19
KDM3AQ9Y4C1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.74■■■□□ 2.19
KDM3AQ9Y4C1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.74■■■□□ 2.19
KDM3AQ9Y4C1 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.74■■■□□ 2.19
KDM3AQ9Y4C1 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
KDM3AQ9Y4C1 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
KDM3AQ9Y4C1 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.73■■■□□ 2.19
KDM3AQ9Y4C1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC28.73■■■□□ 2.19
KDM3AQ9Y4C1 AC100797.4-201ENST00000631653 1827 ntBASIC28.73■■■□□ 2.19
KDM3AQ9Y4C1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
KDM3AQ9Y4C1 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
KDM3AQ9Y4C1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
KDM3AQ9Y4C1 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
KDM3AQ9Y4C1 DRD5P2-201ENST00000421395 2012 ntBASIC28.71■■■□□ 2.19
KDM3AQ9Y4C1 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
KDM3AQ9Y4C1 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC28.7■■■□□ 2.18
KDM3AQ9Y4C1 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
KDM3AQ9Y4C1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.69■■■□□ 2.18
KDM3AQ9Y4C1 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
KDM3AQ9Y4C1 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
KDM3AQ9Y4C1 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
KDM3AQ9Y4C1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC28.69■■■□□ 2.18
KDM3AQ9Y4C1 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
KDM3AQ9Y4C1 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
KDM3AQ9Y4C1 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC28.66■■■□□ 2.18
KDM3AQ9Y4C1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
KDM3AQ9Y4C1 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
KDM3AQ9Y4C1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.66■■■□□ 2.18
KDM3AQ9Y4C1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
KDM3AQ9Y4C1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
KDM3AQ9Y4C1 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
KDM3AQ9Y4C1 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
KDM3AQ9Y4C1 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
KDM3AQ9Y4C1 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
KDM3AQ9Y4C1 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
KDM3AQ9Y4C1 HSD17B1P1-201ENST00000590052 955 ntBASIC28.65■■■□□ 2.18
KDM3AQ9Y4C1 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
KDM3AQ9Y4C1 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
KDM3AQ9Y4C1 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
KDM3AQ9Y4C1 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
KDM3AQ9Y4C1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
KDM3AQ9Y4C1 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
KDM3AQ9Y4C1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
KDM3AQ9Y4C1 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.61■■■□□ 2.17
KDM3AQ9Y4C1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
KDM3AQ9Y4C1 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
KDM3AQ9Y4C1 AC142086.6-201ENST00000621154 1765 ntBASIC28.6■■■□□ 2.17
KDM3AQ9Y4C1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
KDM3AQ9Y4C1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
KDM3AQ9Y4C1 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
KDM3AQ9Y4C1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
KDM3AQ9Y4C1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC28.59■■■□□ 2.17
KDM3AQ9Y4C1 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC28.59■■■□□ 2.17
KDM3AQ9Y4C1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.57■■■□□ 2.16
KDM3AQ9Y4C1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
KDM3AQ9Y4C1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC28.57■■■□□ 2.16
KDM3AQ9Y4C1 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
KDM3AQ9Y4C1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.57■■■□□ 2.16
KDM3AQ9Y4C1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
KDM3AQ9Y4C1 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.56■■■□□ 2.16
KDM3AQ9Y4C1 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
KDM3AQ9Y4C1 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
KDM3AQ9Y4C1 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
KDM3AQ9Y4C1 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
KDM3AQ9Y4C1 ABHD17AP3-201ENST00000503096 1137 ntBASIC28.55■■■□□ 2.16
KDM3AQ9Y4C1 AP002414.2-202ENST00000590929 1450 ntBASIC28.55■■■□□ 2.16
KDM3AQ9Y4C1 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC28.55■■■□□ 2.16
KDM3AQ9Y4C1 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
KDM3AQ9Y4C1 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
KDM3AQ9Y4C1 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
KDM3AQ9Y4C1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.53■■■□□ 2.16
KDM3AQ9Y4C1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC28.53■■■□□ 2.16
KDM3AQ9Y4C1 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16
KDM3AQ9Y4C1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.53■■■□□ 2.16
KDM3AQ9Y4C1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
KDM3AQ9Y4C1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
KDM3AQ9Y4C1 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.52■■■□□ 2.16
KDM3AQ9Y4C1 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.52■■■□□ 2.16
KDM3AQ9Y4C1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC28.52■■■□□ 2.16
KDM3AQ9Y4C1 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.52■■■□□ 2.16
KDM3AQ9Y4C1 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
KDM3AQ9Y4C1 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.16
KDM3AQ9Y4C1 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC28.51■■■□□ 2.15
KDM3AQ9Y4C1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28.51■■■□□ 2.15
KDM3AQ9Y4C1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC28.51■■■□□ 2.15
KDM3AQ9Y4C1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.51■■■□□ 2.15
KDM3AQ9Y4C1 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
KDM3AQ9Y4C1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC28.5■■■□□ 2.15
KDM3AQ9Y4C1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms