Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CCDC140Q96MF4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC140Q96MF4 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC140Q96MF4 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC140Q96MF4 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC140Q96MF4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC140Q96MF4 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC140Q96MF4 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC140Q96MF4 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC140Q96MF4 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC140Q96MF4 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC140Q96MF4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC140Q96MF4 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC140Q96MF4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC140Q96MF4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CCDC140Q96MF4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CCDC140Q96MF4 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC140Q96MF4 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC140Q96MF4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC140Q96MF4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.69■□□□□ 0.74
CCDC140Q96MF4 LINC01971-201ENST00000617888 1048 ntBASIC19.69■□□□□ 0.74
CCDC140Q96MF4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC140Q96MF4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC140Q96MF4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC140Q96MF4 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC140Q96MF4 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC140Q96MF4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC140Q96MF4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC140Q96MF4 ZNRF2P2-203ENST00000454624 420 ntBASIC19.67■□□□□ 0.74
CCDC140Q96MF4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC140Q96MF4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC140Q96MF4 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC140Q96MF4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC140Q96MF4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC140Q96MF4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC140Q96MF4 AC110285.7-201ENST00000624417 1536 ntBASIC19.66■□□□□ 0.74
CCDC140Q96MF4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC140Q96MF4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC140Q96MF4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC140Q96MF4 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CCDC140Q96MF4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
CCDC140Q96MF4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC140Q96MF4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC140Q96MF4 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC140Q96MF4 BX255925.1-201ENST00000566954 1854 ntBASIC19.64■□□□□ 0.73
CCDC140Q96MF4 LINC01003-201ENST00000564834 1764 ntBASIC19.63■□□□□ 0.73
CCDC140Q96MF4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC140Q96MF4 ABHD17AP4-201ENST00000411545 909 ntBASIC19.63■□□□□ 0.73
CCDC140Q96MF4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC140Q96MF4 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC140Q96MF4 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC140Q96MF4 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC140Q96MF4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC140Q96MF4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC140Q96MF4 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC140Q96MF4 DUX4L11-201ENST00000611504 1267 ntBASIC19.61■□□□□ 0.73
CCDC140Q96MF4 DUX4L12-201ENST00000614593 1267 ntBASIC19.61■□□□□ 0.73
CCDC140Q96MF4 DUX4L14-201ENST00000621227 1267 ntBASIC19.61■□□□□ 0.73
CCDC140Q96MF4 CHML-204ENST00000638121 920 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC140Q96MF4 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC140Q96MF4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC140Q96MF4 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC140Q96MF4 AC018358.1-201ENST00000631079 1402 ntBASIC19.6■□□□□ 0.73
CCDC140Q96MF4 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC140Q96MF4 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC140Q96MF4 PEX7-203ENST00000541292 945 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC140Q96MF4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC140Q96MF4 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC140Q96MF4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC140Q96MF4 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC140Q96MF4 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC140Q96MF4 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CCDC140Q96MF4 DUX4L13-201ENST00000554103 1267 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC140Q96MF4 DUX4L15-201ENST00000611059 1267 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 DUX4L23-201ENST00000615195 1269 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 DUX4L24-201ENST00000617576 1269 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 DUX4L22-201ENST00000618238 1269 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 DUX4L20-201ENST00000619712 1269 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 DUX4L21-201ENST00000622058 1269 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 DUX4L10-201ENST00000622460 1267 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 DUX4L25-201ENST00000624915 1269 ntBASIC19.58■□□□□ 0.72
CCDC140Q96MF4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CCDC140Q96MF4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CCDC140Q96MF4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC140Q96MF4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC140Q96MF4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC140Q96MF4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC140Q96MF4 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC140Q96MF4 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC140Q96MF4 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC140Q96MF4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms