Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
SYNE1Q8NF91 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
SYNE1Q8NF91 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
SYNE1Q8NF91 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
SYNE1Q8NF91 AIRN-201ENST00000601203 4374 ntBASIC7.73□□□□□ -1.17
SYNE1Q8NF91 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC7.73□□□□□ -1.17
SYNE1Q8NF91 WHAMMP2-203ENST00000563942 1603 ntBASIC7.73□□□□□ -1.17
SYNE1Q8NF91 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
SYNE1Q8NF91 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
SYNE1Q8NF91 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC7.73□□□□□ -1.17
SYNE1Q8NF91 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 AC008813.1-201ENST00000536597 885 ntBASIC7.72□□□□□ -1.17
SYNE1Q8NF91 MED25-210ENST00000612854 801 ntTSL 5 BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 MED25-214ENST00000622402 642 ntTSL 5 BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC7.72□□□□□ -1.17
SYNE1Q8NF91 ABCB10P1-201ENST00000614297 2181 ntBASIC7.72□□□□□ -1.17
SYNE1Q8NF91 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
SYNE1Q8NF91 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC7.71□□□□□ -1.17
SYNE1Q8NF91 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
SYNE1Q8NF91 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC7.71□□□□□ -1.17
SYNE1Q8NF91 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
SYNE1Q8NF91 GUK1-208ENST00000366728 842 ntTSL 2 BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 AC135983.2-203ENST00000454486 1613 ntBASIC7.71□□□□□ -1.18
SYNE1Q8NF91 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 AC060814.1-201ENST00000554326 538 ntBASIC7.71□□□□□ -1.18
SYNE1Q8NF91 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 PEX7-203ENST00000541292 945 ntTSL 5 BASIC7.71□□□□□ -1.18
SYNE1Q8NF91 AC148477.6-201ENST00000623746 465 ntBASIC7.71□□□□□ -1.18
SYNE1Q8NF91 AC018358.1-201ENST00000631079 1402 ntBASIC7.7□□□□□ -1.18
SYNE1Q8NF91 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
SYNE1Q8NF91 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
SYNE1Q8NF91 NTF6A-201ENST00000591175 560 ntBASIC7.7□□□□□ -1.18
SYNE1Q8NF91 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
SYNE1Q8NF91 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
SYNE1Q8NF91 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
SYNE1Q8NF91 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
SYNE1Q8NF91 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
SYNE1Q8NF91 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
SYNE1Q8NF91 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC7.69□□□□□ -1.18
SYNE1Q8NF91 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 AL035685.1-201ENST00000636663 812 ntBASIC7.69□□□□□ -1.18
SYNE1Q8NF91 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC7.69□□□□□ -1.18
SYNE1Q8NF91 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 GFER-205ENST00000569451 517 ntTSL 5 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 U85056.1-201ENST00000616429 682 ntBASIC7.68□□□□□ -1.18
SYNE1Q8NF91 AC129492.7-201ENST00000622992 756 ntBASIC7.68□□□□□ -1.18
SYNE1Q8NF91 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
SYNE1Q8NF91 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC7.67□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms