Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
RNF43Q68DV7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
RNF43Q68DV7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
RNF43Q68DV7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.55■■□□□ 1.84
RNF43Q68DV7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
RNF43Q68DV7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
RNF43Q68DV7 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
RNF43Q68DV7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
RNF43Q68DV7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
RNF43Q68DV7 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RNF43Q68DV7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
RNF43Q68DV7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
RNF43Q68DV7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC26.53■■□□□ 1.84
RNF43Q68DV7 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
RNF43Q68DV7 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
RNF43Q68DV7 WHAMMP2-203ENST00000563942 1603 ntBASIC26.51■■□□□ 1.83
RNF43Q68DV7 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
RNF43Q68DV7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
RNF43Q68DV7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.51■■□□□ 1.83
RNF43Q68DV7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
RNF43Q68DV7 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
RNF43Q68DV7 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
RNF43Q68DV7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
RNF43Q68DV7 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.49■■□□□ 1.83
RNF43Q68DV7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
RNF43Q68DV7 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
RNF43Q68DV7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
RNF43Q68DV7 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.48■■□□□ 1.83
RNF43Q68DV7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
RNF43Q68DV7 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
RNF43Q68DV7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
RNF43Q68DV7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
RNF43Q68DV7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
RNF43Q68DV7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
RNF43Q68DV7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
RNF43Q68DV7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
RNF43Q68DV7 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
RNF43Q68DV7 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
RNF43Q68DV7 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.46■■□□□ 1.83
RNF43Q68DV7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.46■■□□□ 1.83
RNF43Q68DV7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
RNF43Q68DV7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.45■■□□□ 1.83
RNF43Q68DV7 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
RNF43Q68DV7 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.44■■□□□ 1.82
RNF43Q68DV7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
RNF43Q68DV7 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
RNF43Q68DV7 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
RNF43Q68DV7 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF43Q68DV7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF43Q68DV7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF43Q68DV7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
RNF43Q68DV7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
RNF43Q68DV7 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
RNF43Q68DV7 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
RNF43Q68DV7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC26.41■■□□□ 1.82
RNF43Q68DV7 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
RNF43Q68DV7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RNF43Q68DV7 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.4■■□□□ 1.82
RNF43Q68DV7 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
RNF43Q68DV7 AP004833.2-201ENST00000532228 1454 ntBASIC26.39■■□□□ 1.82
RNF43Q68DV7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.39■■□□□ 1.82
RNF43Q68DV7 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.39■■□□□ 1.81
RNF43Q68DV7 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
RNF43Q68DV7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF43Q68DV7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
RNF43Q68DV7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.36■■□□□ 1.81
RNF43Q68DV7 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF43Q68DV7 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
RNF43Q68DV7 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF43Q68DV7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
RNF43Q68DV7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF43Q68DV7 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.35■■□□□ 1.81
RNF43Q68DV7 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.35■■□□□ 1.81
RNF43Q68DV7 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.35■■□□□ 1.81
RNF43Q68DV7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF43Q68DV7 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF43Q68DV7 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF43Q68DV7 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.34■■□□□ 1.81
RNF43Q68DV7 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.34■■□□□ 1.81
RNF43Q68DV7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
RNF43Q68DV7 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF43Q68DV7 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
RNF43Q68DV7 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC26.33■■□□□ 1.8
RNF43Q68DV7 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
RNF43Q68DV7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF43Q68DV7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF43Q68DV7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF43Q68DV7 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF43Q68DV7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
RNF43Q68DV7 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.31■■□□□ 1.8
RNF43Q68DV7 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.31■■□□□ 1.8
RNF43Q68DV7 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RNF43Q68DV7 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC26.3■■□□□ 1.8
RNF43Q68DV7 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
RNF43Q68DV7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RNF43Q68DV7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
RNF43Q68DV7 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
RNF43Q68DV7 RARRES2P2-201ENST00000394842 485 ntBASIC26.28■■□□□ 1.8
RNF43Q68DV7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RNF43Q68DV7 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms