Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.82■■□□□ 1.72
CXCL12P48061 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CXCL12P48061 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CXCL12P48061 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CXCL12P48061 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
CXCL12P48061 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CXCL12P48061 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CXCL12P48061 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CXCL12P48061 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
CXCL12P48061 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CXCL12P48061 AC126177.7-201ENST00000547904 679 ntBASIC25.8■■□□□ 1.72
CXCL12P48061 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CXCL12P48061 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CXCL12P48061 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
CXCL12P48061 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CXCL12P48061 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CXCL12P48061 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.79■■□□□ 1.72
CXCL12P48061 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC25.78■■□□□ 1.72
CXCL12P48061 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CXCL12P48061 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
CXCL12P48061 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CXCL12P48061 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.77■■□□□ 1.72
CXCL12P48061 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC25.77■■□□□ 1.72
CXCL12P48061 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC25.77■■□□□ 1.72
CXCL12P48061 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CXCL12P48061 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
CXCL12P48061 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC25.76■■□□□ 1.71
CXCL12P48061 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CXCL12P48061 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.76■■□□□ 1.71
CXCL12P48061 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CXCL12P48061 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CXCL12P48061 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
CXCL12P48061 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CXCL12P48061 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
CXCL12P48061 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC25.74■■□□□ 1.71
CXCL12P48061 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CXCL12P48061 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CXCL12P48061 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CXCL12P48061 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
CXCL12P48061 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
CXCL12P48061 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CXCL12P48061 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CXCL12P48061 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC25.71■■□□□ 1.71
CXCL12P48061 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC25.71■■□□□ 1.71
CXCL12P48061 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC25.69■■□□□ 1.7
CXCL12P48061 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC25.69■■□□□ 1.7
CXCL12P48061 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CXCL12P48061 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CXCL12P48061 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CXCL12P48061 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CXCL12P48061 HES4-204ENST00000484667 667 ntTSL 3 BASIC25.68■■□□□ 1.7
CXCL12P48061 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.68■■□□□ 1.7
CXCL12P48061 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
CXCL12P48061 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CXCL12P48061 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
CXCL12P48061 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC25.67■■□□□ 1.7
CXCL12P48061 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25.66■■□□□ 1.7
CXCL12P48061 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.66■■□□□ 1.7
CXCL12P48061 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CXCL12P48061 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CXCL12P48061 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.66■■□□□ 1.7
CXCL12P48061 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CXCL12P48061 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.66■■□□□ 1.7
CXCL12P48061 AC129492.7-201ENST00000622992 756 ntBASIC25.66■■□□□ 1.7
CXCL12P48061 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CXCL12P48061 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.66■■□□□ 1.7
CXCL12P48061 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
CXCL12P48061 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CXCL12P48061 AL135925.1-201ENST00000605920 1701 ntBASIC25.65■■□□□ 1.7
CXCL12P48061 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CXCL12P48061 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC25.64■■□□□ 1.7
CXCL12P48061 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
CXCL12P48061 DUX4L18-201ENST00000553347 1267 ntBASIC25.63■■□□□ 1.69
CXCL12P48061 AC007029.1-201ENST00000604183 313 ntBASIC25.63■■□□□ 1.69
CXCL12P48061 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.63■■□□□ 1.69
CXCL12P48061 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CXCL12P48061 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CXCL12P48061 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC25.62■■□□□ 1.69
CXCL12P48061 AL157400.5-201ENST00000507624 621 ntBASIC25.62■■□□□ 1.69
CXCL12P48061 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CXCL12P48061 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CXCL12P48061 AC133552.2-201ENST00000619106 1032 ntBASIC25.61■■□□□ 1.69
CXCL12P48061 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
CXCL12P48061 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CXCL12P48061 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CXCL12P48061 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC25.6■■□□□ 1.69
CXCL12P48061 AL592293.1-201ENST00000502889 1188 ntBASIC25.6■■□□□ 1.69
CXCL12P48061 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
CXCL12P48061 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
CXCL12P48061 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC25.59■■□□□ 1.69
CXCL12P48061 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CXCL12P48061 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.59■■□□□ 1.69
CXCL12P48061 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.59■■□□□ 1.69
CXCL12P48061 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CXCL12P48061 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
CXCL12P48061 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CXCL12P48061 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
CXCL12P48061 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CXCL12P48061 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CXCL12P48061 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms