Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CKS2P33552 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CKS2P33552 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC18.57■□□□□ 0.56
CKS2P33552 WASH5P-204ENST00000632292 975 ntBASIC18.57■□□□□ 0.56
CKS2P33552 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CKS2P33552 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CKS2P33552 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CKS2P33552 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC18.56■□□□□ 0.56
CKS2P33552 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CKS2P33552 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC18.56■□□□□ 0.56
CKS2P33552 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CKS2P33552 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.55■□□□□ 0.56
CKS2P33552 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC18.55■□□□□ 0.56
CKS2P33552 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CKS2P33552 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CKS2P33552 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CKS2P33552 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CKS2P33552 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CKS2P33552 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CKS2P33552 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC18.54■□□□□ 0.56
CKS2P33552 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CKS2P33552 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CKS2P33552 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CKS2P33552 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CKS2P33552 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CKS2P33552 AC091060.1-201ENST00000623524 1766 ntBASIC18.52■□□□□ 0.55
CKS2P33552 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CKS2P33552 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CKS2P33552 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CKS2P33552 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CKS2P33552 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CKS2P33552 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CKS2P33552 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC18.5■□□□□ 0.55
CKS2P33552 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CKS2P33552 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
CKS2P33552 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CKS2P33552 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CKS2P33552 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CKS2P33552 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CKS2P33552 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CKS2P33552 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CKS2P33552 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
CKS2P33552 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
CKS2P33552 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CKS2P33552 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CKS2P33552 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.48■□□□□ 0.55
CKS2P33552 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CKS2P33552 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CKS2P33552 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CKS2P33552 ZNRF2P1-201ENST00000441407 443 ntBASIC18.47■□□□□ 0.55
CKS2P33552 AL031258.1-201ENST00000623562 325 ntBASIC18.47■□□□□ 0.55
CKS2P33552 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC18.47■□□□□ 0.55
CKS2P33552 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC18.47■□□□□ 0.55
CKS2P33552 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CKS2P33552 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC18.46■□□□□ 0.55
CKS2P33552 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CKS2P33552 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC18.46■□□□□ 0.54
CKS2P33552 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
CKS2P33552 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CKS2P33552 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CKS2P33552 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CKS2P33552 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CKS2P33552 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CKS2P33552 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC18.44■□□□□ 0.54
CKS2P33552 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC18.44■□□□□ 0.54
CKS2P33552 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC18.44■□□□□ 0.54
CKS2P33552 AC020928.2-201ENST00000588717 2197 ntBASIC18.44■□□□□ 0.54
CKS2P33552 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CKS2P33552 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
CKS2P33552 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC18.43■□□□□ 0.54
CKS2P33552 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CKS2P33552 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CKS2P33552 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CKS2P33552 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CKS2P33552 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC18.43■□□□□ 0.54
CKS2P33552 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CKS2P33552 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CKS2P33552 AC145676.1-201ENST00000514988 2004 ntBASIC18.42■□□□□ 0.54
CKS2P33552 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CKS2P33552 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.42■□□□□ 0.54
CKS2P33552 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.41■□□□□ 0.54
CKS2P33552 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC18.41■□□□□ 0.54
CKS2P33552 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CKS2P33552 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CKS2P33552 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CKS2P33552 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CKS2P33552 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CKS2P33552 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CKS2P33552 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.39■□□□□ 0.54
CKS2P33552 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CKS2P33552 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CKS2P33552 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC18.39■□□□□ 0.53
CKS2P33552 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CKS2P33552 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC18.39■□□□□ 0.53
CKS2P33552 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC18.38■□□□□ 0.53
CKS2P33552 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CKS2P33552 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.38■□□□□ 0.53
CKS2P33552 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CKS2P33552 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CKS2P33552 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms