Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.86■■□□□ 1.09
SLC6A1P30531 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A1P30531 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SLC6A1P30531 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
SLC6A1P30531 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SLC6A1P30531 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.84■■□□□ 1.09
SLC6A1P30531 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SLC6A1P30531 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SLC6A1P30531 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SLC6A1P30531 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.83■■□□□ 1.09
SLC6A1P30531 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SLC6A1P30531 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SLC6A1P30531 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SLC6A1P30531 AC145676.1-201ENST00000514988 2004 ntBASIC21.82■■□□□ 1.08
SLC6A1P30531 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.82■■□□□ 1.08
SLC6A1P30531 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SLC6A1P30531 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SLC6A1P30531 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
SLC6A1P30531 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SLC6A1P30531 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SLC6A1P30531 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.8■■□□□ 1.08
SLC6A1P30531 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SLC6A1P30531 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SLC6A1P30531 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SLC6A1P30531 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SLC6A1P30531 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SLC6A1P30531 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.79■■□□□ 1.08
SLC6A1P30531 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.79■■□□□ 1.08
SLC6A1P30531 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SLC6A1P30531 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SLC6A1P30531 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC6A1P30531 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC6A1P30531 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC6A1P30531 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SLC6A1P30531 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC6A1P30531 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SLC6A1P30531 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
SLC6A1P30531 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.77■■□□□ 1.08
SLC6A1P30531 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SLC6A1P30531 SETD8P1-201ENST00000623146 1180 ntBASIC21.77■■□□□ 1.08
SLC6A1P30531 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.77■■□□□ 1.08
SLC6A1P30531 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SLC6A1P30531 AP004833.2-201ENST00000532228 1454 ntBASIC21.77■■□□□ 1.07
SLC6A1P30531 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SLC6A1P30531 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.76■■□□□ 1.07
SLC6A1P30531 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SLC6A1P30531 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
SLC6A1P30531 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SLC6A1P30531 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.75■■□□□ 1.07
SLC6A1P30531 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.75■■□□□ 1.07
SLC6A1P30531 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.75■■□□□ 1.07
SLC6A1P30531 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SLC6A1P30531 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.74■■□□□ 1.07
SLC6A1P30531 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SLC6A1P30531 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC6A1P30531 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SLC6A1P30531 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC6A1P30531 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SLC6A1P30531 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.73■■□□□ 1.07
SLC6A1P30531 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SLC6A1P30531 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SLC6A1P30531 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SLC6A1P30531 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.73■■□□□ 1.07
SLC6A1P30531 AC010864.1-201ENST00000609407 1511 ntBASIC21.73■■□□□ 1.07
SLC6A1P30531 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SLC6A1P30531 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
SLC6A1P30531 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.72■■□□□ 1.07
SLC6A1P30531 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.72■■□□□ 1.07
SLC6A1P30531 AC097358.2-201ENST00000607541 1159 ntBASIC21.72■■□□□ 1.07
SLC6A1P30531 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A1P30531 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.71■■□□□ 1.07
SLC6A1P30531 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.71■■□□□ 1.07
SLC6A1P30531 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A1P30531 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A1P30531 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A1P30531 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A1P30531 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A1P30531 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A1P30531 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A1P30531 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A1P30531 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A1P30531 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A1P30531 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A1P30531 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
SLC6A1P30531 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A1P30531 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A1P30531 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A1P30531 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A1P30531 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A1P30531 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A1P30531 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A1P30531 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A1P30531 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SLC6A1P30531 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.67■■□□□ 1.06
SLC6A1P30531 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
SLC6A1P30531 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A1P30531 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A1P30531 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC6A1P30531 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A1P30531 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms