Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CXCL1P09341 EBPL-203ENST00000378270 579 ntTSL 2 BASIC19.68■□□□□ 0.74
CXCL1P09341 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.68■□□□□ 0.74
CXCL1P09341 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CXCL1P09341 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CXCL1P09341 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CXCL1P09341 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CXCL1P09341 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CXCL1P09341 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CXCL1P09341 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CXCL1P09341 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CXCL1P09341 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CXCL1P09341 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CXCL1P09341 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CXCL1P09341 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CXCL1P09341 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CXCL1P09341 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CXCL1P09341 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CXCL1P09341 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CXCL1P09341 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CXCL1P09341 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CXCL1P09341 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CXCL1P09341 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CXCL1P09341 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC19.64■□□□□ 0.73
CXCL1P09341 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.64■□□□□ 0.73
CXCL1P09341 AC133561.1-201ENST00000568600 2415 ntBASIC19.63■□□□□ 0.73
CXCL1P09341 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CXCL1P09341 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CXCL1P09341 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.62■□□□□ 0.73
CXCL1P09341 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL1P09341 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.62■□□□□ 0.73
CXCL1P09341 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL1P09341 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CXCL1P09341 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL1P09341 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
CXCL1P09341 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL1P09341 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CXCL1P09341 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL1P09341 ZNRF2P1-201ENST00000441407 443 ntBASIC19.61■□□□□ 0.73
CXCL1P09341 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.61■□□□□ 0.73
CXCL1P09341 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL1P09341 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL1P09341 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL1P09341 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL1P09341 AC145676.1-201ENST00000514988 2004 ntBASIC19.59■□□□□ 0.73
CXCL1P09341 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CXCL1P09341 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.59■□□□□ 0.73
CXCL1P09341 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CXCL1P09341 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CXCL1P09341 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
CXCL1P09341 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CXCL1P09341 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CXCL1P09341 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CXCL1P09341 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
CXCL1P09341 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CXCL1P09341 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL1P09341 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CXCL1P09341 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL1P09341 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL1P09341 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL1P09341 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL1P09341 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL1P09341 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL1P09341 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.55■□□□□ 0.72
CXCL1P09341 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL1P09341 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL1P09341 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL1P09341 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL1P09341 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL1P09341 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CXCL1P09341 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL1P09341 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.54■□□□□ 0.72
CXCL1P09341 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL1P09341 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.54■□□□□ 0.72
CXCL1P09341 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL1P09341 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL1P09341 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.52■□□□□ 0.72
CXCL1P09341 LINC01003-201ENST00000564834 1764 ntBASIC19.52■□□□□ 0.72
CXCL1P09341 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL1P09341 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.52■□□□□ 0.72
CXCL1P09341 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CXCL1P09341 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CXCL1P09341 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.52■□□□□ 0.71
CXCL1P09341 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CXCL1P09341 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CXCL1P09341 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CXCL1P09341 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.51■□□□□ 0.71
CXCL1P09341 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL1P09341 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL1P09341 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL1P09341 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL1P09341 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL1P09341 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL1P09341 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL1P09341 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL1P09341 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL1P09341 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC19.49■□□□□ 0.71
CXCL1P09341 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL1P09341 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL1P09341 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms