Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 GSKIP-203ENST00000554182 760 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.642e-6■■■■■ 33.9
SMNDC1O75940 GSKIP-206ENST00000555757 361 ntTSL 36.13□□□□□ -1.432e-6■■■■■ 33.9
SMNDC1O75940 RNU2-33P-201ENST00000410344 192 ntBASIC4.95□□□□□ -1.622e-6■■■■■ 33.9
SMNDC1O75940 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC13.98□□□□□ -0.171e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-201ENST00000347464 2915 ntTSL 1 (best) BASIC13.8□□□□□ -0.21e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-203ENST00000392017 3405 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.581e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-205ENST00000392020 3213 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.591e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-204ENST00000392018 3313 ntTSL 5 BASIC10.72□□□□□ -0.691e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-215ENST00000479942 3559 ntTSL 1 (best)10.55□□□□□ -0.721e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-206ENST00000392021 3301 ntTSL 1 (best)10.28□□□□□ -0.761e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-214ENST00000474148 4208 ntTSL 29.54□□□□□ -0.881e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-211ENST00000464645 560 ntTSL 48.06□□□□□ -1.121e-76■■■■■ 33.7
SMNDC1O75940 ATG16L1-218ENST00000498620 740 ntTSL 57.2□□□□□ -1.261e-76■■■■■ 33.7
SMNDC1O75940 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC12.26□□□□□ -0.453e-21■■■■■ 33.7
SMNDC1O75940 SGSM3-206ENST00000467915 769 ntTSL 314.22□□□□□ -0.137e-7■■■■■ 33.6
SMNDC1O75940 SGSM3-208ENST00000470518 854 ntTSL 312.07□□□□□ -0.487e-7■■■■■ 33.6
SMNDC1O75940 CHTF18-204ENST00000440239 1801 ntTSL 1 (best)20.55■□□□□ 0.881e-6■■■■■ 33.4
SMNDC1O75940 CHTF18-218ENST00000569270 711 ntTSL 517.47■□□□□ 0.391e-6■■■■■ 33.4
SMNDC1O75940 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.31e-6■■■■■ 33.4
SMNDC1O75940 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.251e-6■■■■■ 33.4
SMNDC1O75940 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.081e-6■■■■■ 33.4
SMNDC1O75940 CHTF18-208ENST00000471202 4494 ntTSL 214.75□□□□□ -0.051e-6■■■■■ 33.4
SMNDC1O75940 CHTF18-207ENST00000464728 4088 ntTSL 214.06□□□□□ -0.161e-6■■■■■ 33.4
SMNDC1O75940 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.191e-6■■■■■ 33.4
SMNDC1O75940 PLK1-205ENST00000564794 683 ntTSL 515.58■□□□□ 0.083e-11■■■■■ 33.4
SMNDC1O75940 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22■■□□□ 1.111e-7■■■■■ 33.3
SMNDC1O75940 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.771e-7■■■■■ 33.3
SMNDC1O75940 SNHG1-222ENST00000545308 646 ntTSL 26.6□□□□□ -1.352e-47■■■■■ 33.3
SMNDC1O75940 SNHG1-207ENST00000537965 578 ntTSL 56.55□□□□□ -1.362e-47■■■■■ 33.3
SMNDC1O75940 SLC19A1-204ENST00000427839 648 ntTSL 315.88■□□□□ 0.131e-6■■■■■ 33.2
SMNDC1O75940 SLC19A1-205ENST00000443742 777 ntTSL 314.02□□□□□ -0.171e-6■■■■■ 33.2
SMNDC1O75940 TSR1-203ENST00000575049 387 ntTSL 37.02□□□□□ -1.298e-26■■■■■ 33.2
SMNDC1O75940 SNORD4A-201ENST00000459174 72 ntBASIC-0.1□□□□□ -2.431e-48■■■■■ 33
SMNDC1O75940 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.541e-7■■■■■ 32.9
SMNDC1O75940 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.04■□□□□ 0.321e-7■■■■■ 32.9
SMNDC1O75940 WDR73-208ENST00000559126 2031 ntTSL 218.08■□□□□ 0.493e-6■■■■■ 32.9
SMNDC1O75940 WDR73-210ENST00000559224 788 ntTSL 515.11■□□□□ 0.013e-6■■■■■ 32.9
SMNDC1O75940 WDR73-205ENST00000558521 997 ntTSL 315.11■□□□□ 0.013e-6■■■■■ 32.9
SMNDC1O75940 WDR73-207ENST00000559015 2140 ntTSL 214.52□□□□□ -0.093e-6■■■■■ 32.9
SMNDC1O75940 WDR73-206ENST00000558608 2154 ntTSL 214.36□□□□□ -0.113e-6■■■■■ 32.9
SMNDC1O75940 WDR73-213ENST00000559994 2063 ntTSL 514.28□□□□□ -0.123e-6■■■■■ 32.9
SMNDC1O75940 WDR73-211ENST00000559452 1240 ntTSL 314.15□□□□□ -0.143e-6■■■■■ 32.9
SMNDC1O75940 WDR73-218ENST00000560966 5071 ntTSL 213.82□□□□□ -0.23e-6■■■■■ 32.9
SMNDC1O75940 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.293e-6■■■■■ 32.9
SMNDC1O75940 WDR73-201ENST00000398528 1915 ntTSL 1 (best)13.1□□□□□ -0.313e-6■■■■■ 32.9
SMNDC1O75940 WDR73-219ENST00000561329 1007 ntTSL 29.67□□□□□ -0.863e-6■■■■■ 32.9
SMNDC1O75940 WDR73-209ENST00000559178 933 ntTSL 38.71□□□□□ -1.023e-6■■■■■ 32.9
SMNDC1O75940 WDR73-217ENST00000560835 582 ntTSL 28.58□□□□□ -1.043e-6■■■■■ 32.9
SMNDC1O75940 WDR73-214ENST00000560088 526 ntTSL 37.86□□□□□ -1.153e-6■■■■■ 32.9
SMNDC1O75940 WDR73-221ENST00000561447 560 ntTSL 47.65□□□□□ -1.183e-6■■■■■ 32.9
SMNDC1O75940 WDR73-216ENST00000560252 1180 ntTSL 27.47□□□□□ -1.213e-6■■■■■ 32.9
SMNDC1O75940 ZNF7-210ENST00000530082 581 ntTSL 318.34■□□□□ 0.535e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.365e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-214ENST00000532382 855 ntTSL 316.01■□□□□ 0.155e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-212ENST00000530776 546 ntTSL 415.75■□□□□ 0.115e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.75■□□□□ 0.115e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-216ENST00000532777 915 ntTSL 1 (best)15.37■□□□□ 0.055e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.78□□□□□ -0.045e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.03□□□□□ -0.165e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.94□□□□□ -0.185e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-208ENST00000529767 546 ntTSL 413.8□□□□□ -0.25e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-213ENST00000532051 540 ntTSL 413.46□□□□□ -0.255e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.275e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-217ENST00000533314 516 ntTSL 411.26□□□□□ -0.615e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-209ENST00000529819 513 ntTSL 4 BASIC11.07□□□□□ -0.645e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-204ENST00000527218 545 ntTSL 410.89□□□□□ -0.675e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-205ENST00000528017 5641 ntTSL 1 (best)10.53□□□□□ -0.725e-9■■■■■ 32.9
SMNDC1O75940 BACE1-AS-201ENST00000614401 520 ntTSL 4 BASIC9.85□□□□□ -0.835e-9■■■■■ 32.9
SMNDC1O75940 ZNF7-215ENST00000532393 569 ntTSL 47.72□□□□□ -1.175e-9■■■■■ 32.9
SMNDC1O75940 GREB1-210ENST00000628795 438 ntTSL 55.35□□□□□ -1.555e-9■■■■■ 32.9
SMNDC1O75940 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.731e-7■■■■■ 32.9
SMNDC1O75940 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.426e-7■■■■■ 32.9
SMNDC1O75940 SRSF2-201ENST00000358156 572 ntTSL 416.92■□□□□ 0.36e-7■■■■■ 32.9
SMNDC1O75940 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.226e-7■■■■■ 32.9
SMNDC1O75940 SRSF2-207ENST00000583836 561 ntTSL 515.64■□□□□ 0.096e-7■■■■■ 32.9
SMNDC1O75940 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.32■□□□□ 0.046e-7■■■■■ 32.9
SMNDC1O75940 SRSF2-204ENST00000452355 1357 ntTSL 514.32□□□□□ -0.126e-7■■■■■ 32.9
SMNDC1O75940 SRSF2-208ENST00000585202 1359 ntTSL 313.65□□□□□ -0.226e-7■■■■■ 32.9
SMNDC1O75940 PFKL-207ENST00000474114 6007 ntTSL 1 (best)19.12■□□□□ 0.658e-12■■■■■ 32.9
SMNDC1O75940 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.79■□□□□ 0.63e-7■■■■■ 32.8
SMNDC1O75940 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.62■□□□□ 0.573e-7■■■■■ 32.8
SMNDC1O75940 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.553e-7■■■■■ 32.8
SMNDC1O75940 EML3-203ENST00000394776 2818 ntTSL 217.82■□□□□ 0.443e-7■■■■■ 32.8
SMNDC1O75940 EML3-204ENST00000419857 578 ntTSL 417.63■□□□□ 0.413e-7■■■■■ 32.8
SMNDC1O75940 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.343e-7■■■■■ 32.8
SMNDC1O75940 EML3-213ENST00000494448 3665 ntTSL 215.25■□□□□ 0.033e-7■■■■■ 32.8
SMNDC1O75940 EML3-209ENST00000466671 565 ntTSL 412.93□□□□□ -0.343e-7■■■■■ 32.8
SMNDC1O75940 EML3-210ENST00000466886 599 ntTSL 412.38□□□□□ -0.433e-7■■■■■ 32.8
SMNDC1O75940 COPA-203ENST00000481040 578 ntTSL 37.25□□□□□ -1.255e-12■■■■■ 32.7
SMNDC1O75940 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.182e-7■■■■■ 32.4
SMNDC1O75940 CRIP2-211ENST00000552643 1383 ntTSL 221.87■■□□□ 1.092e-7■■■■■ 32.4
SMNDC1O75940 CRIP2-210ENST00000551836 627 ntTSL 321.77■■□□□ 1.082e-7■■■■■ 32.4
SMNDC1O75940 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.882e-7■■■■■ 32.4
SMNDC1O75940 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.846e-24■■■■■ 32.4
SMNDC1O75940 CRIP2-204ENST00000547643 1373 ntTSL 320.24■□□□□ 0.832e-7■■■■■ 32.4
SMNDC1O75940 MGAT4B-221ENST00000523108 1080 ntTSL 519.9■□□□□ 0.782e-7■■■■■ 32.4
SMNDC1O75940 MGAT4B-212ENST00000520134 592 ntTSL 319.9■□□□□ 0.782e-7■■■■■ 32.4
SMNDC1O75940 TERT-203ENST00000460137 2992 ntTSL 1 (best)19.63■□□□□ 0.732e-6■■■■■ 32.4
SMNDC1O75940 MGAT4B-208ENST00000519616 522 ntTSL 519.24■□□□□ 0.672e-7■■■■■ 32.4
SMNDC1O75940 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.93■□□□□ 0.626e-24■■■■■ 32.4
Retrieved 100 of 11,362 protein–RNA pairs in 311.9 ms