Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC32.56■■■□□ 2.8
CACNA1FO60840 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC32.55■■■□□ 2.8
CACNA1FO60840 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC32.55■■■□□ 2.8
CACNA1FO60840 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CACNA1FO60840 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CACNA1FO60840 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC32.55■■■□□ 2.8
CACNA1FO60840 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CACNA1FO60840 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CACNA1FO60840 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC32.54■■■□□ 2.8
CACNA1FO60840 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
CACNA1FO60840 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CACNA1FO60840 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.53■■■□□ 2.8
CACNA1FO60840 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC32.53■■■□□ 2.8
CACNA1FO60840 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CACNA1FO60840 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC32.53■■■□□ 2.8
CACNA1FO60840 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC32.52■■■□□ 2.8
CACNA1FO60840 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC32.52■■■□□ 2.8
CACNA1FO60840 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC32.51■■■□□ 2.79
CACNA1FO60840 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CACNA1FO60840 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC32.5■■■□□ 2.79
CACNA1FO60840 MBP-237ENST00000579129 1052 ntTSL 5 BASIC32.5■■■□□ 2.79
CACNA1FO60840 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC32.5■■■□□ 2.79
CACNA1FO60840 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC32.5■■■□□ 2.79
CACNA1FO60840 AP002414.2-202ENST00000590929 1450 ntBASIC32.49■■■□□ 2.79
CACNA1FO60840 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CACNA1FO60840 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CACNA1FO60840 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC32.48■■■□□ 2.79
CACNA1FO60840 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CACNA1FO60840 AC110285.7-201ENST00000624417 1536 ntBASIC32.48■■■□□ 2.79
CACNA1FO60840 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC32.47■■■□□ 2.79
CACNA1FO60840 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CACNA1FO60840 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CACNA1FO60840 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
CACNA1FO60840 METRNL-202ENST00000570778 967 ntTSL 5 BASIC32.45■■■□□ 2.79
CACNA1FO60840 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC32.45■■■□□ 2.78
CACNA1FO60840 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC32.45■■■□□ 2.78
CACNA1FO60840 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
CACNA1FO60840 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
CACNA1FO60840 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC32.45■■■□□ 2.78
CACNA1FO60840 AC008813.1-201ENST00000536597 885 ntBASIC32.44■■■□□ 2.78
CACNA1FO60840 AC018358.1-201ENST00000631079 1402 ntBASIC32.44■■■□□ 2.78
CACNA1FO60840 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC32.43■■■□□ 2.78
CACNA1FO60840 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CACNA1FO60840 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC32.43■■■□□ 2.78
CACNA1FO60840 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
CACNA1FO60840 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC32.42■■■□□ 2.78
CACNA1FO60840 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
CACNA1FO60840 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC32.42■■■□□ 2.78
CACNA1FO60840 DRD5P2-201ENST00000421395 2012 ntBASIC32.42■■■□□ 2.78
CACNA1FO60840 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CACNA1FO60840 PROC-203ENST00000409048 1586 ntTSL 5 BASIC32.41■■■□□ 2.78
CACNA1FO60840 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
CACNA1FO60840 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CACNA1FO60840 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC32.4■■■□□ 2.78
CACNA1FO60840 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC32.4■■■□□ 2.78
CACNA1FO60840 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC32.4■■■□□ 2.78
CACNA1FO60840 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC32.39■■■□□ 2.78
CACNA1FO60840 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC32.39■■■□□ 2.77
CACNA1FO60840 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CACNA1FO60840 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC32.38■■■□□ 2.77
CACNA1FO60840 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
CACNA1FO60840 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC32.37■■■□□ 2.77
CACNA1FO60840 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC32.36■■■□□ 2.77
CACNA1FO60840 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC32.36■■■□□ 2.77
CACNA1FO60840 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC32.36■■■□□ 2.77
CACNA1FO60840 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
CACNA1FO60840 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC32.33■■■□□ 2.77
CACNA1FO60840 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
CACNA1FO60840 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
CACNA1FO60840 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CACNA1FO60840 SRP68-213ENST00000629930 165 ntTSL 5 BASIC32.3■■■□□ 2.76
CACNA1FO60840 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC32.3■■■□□ 2.76
CACNA1FO60840 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
CACNA1FO60840 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
CACNA1FO60840 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC32.3■■■□□ 2.76
CACNA1FO60840 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
CACNA1FO60840 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
CACNA1FO60840 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CACNA1FO60840 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
CACNA1FO60840 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CACNA1FO60840 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC32.28■■■□□ 2.76
CACNA1FO60840 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
CACNA1FO60840 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC32.28■■■□□ 2.76
CACNA1FO60840 CHST11-203ENST00000547956 936 ntTSL 2 BASIC32.28■■■□□ 2.76
CACNA1FO60840 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CACNA1FO60840 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
CACNA1FO60840 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CACNA1FO60840 AC139426.1-201ENST00000568218 2529 ntBASIC32.26■■■□□ 2.76
CACNA1FO60840 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.75
CACNA1FO60840 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
CACNA1FO60840 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
CACNA1FO60840 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CACNA1FO60840 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CACNA1FO60840 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC32.25■■■□□ 2.75
CACNA1FO60840 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC32.24■■■□□ 2.75
CACNA1FO60840 MIR219A2-201ENST00000608502 1504 ntBASIC32.23■■■□□ 2.75
CACNA1FO60840 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
CACNA1FO60840 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC32.23■■■□□ 2.75
CACNA1FO60840 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CACNA1FO60840 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC32.22■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms