Protein–RNA interactions for Protein: A0A5B7

TCRBV4S1A1T, T-cell receptor beta variable 29-1 (Fragment), humanhuman

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV4S1A1TA0A5B7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TCRBV4S1A1TA0A5B7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TCRBV4S1A1TA0A5B7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TCRBV4S1A1TA0A5B7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.3■□□□□ 0.84
TCRBV4S1A1TA0A5B7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TCRBV4S1A1TA0A5B7 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
TCRBV4S1A1TA0A5B7 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L13-201ENST00000554103 1267 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L15-201ENST00000611059 1267 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L23-201ENST00000615195 1269 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L24-201ENST00000617576 1269 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L22-201ENST00000618238 1269 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L20-201ENST00000619712 1269 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L21-201ENST00000622058 1269 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L10-201ENST00000622460 1267 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 DUX4L25-201ENST00000624915 1269 ntBASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.29■□□□□ 0.84
TCRBV4S1A1TA0A5B7 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TCRBV4S1A1TA0A5B7 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TCRBV4S1A1TA0A5B7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TCRBV4S1A1TA0A5B7 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TCRBV4S1A1TA0A5B7 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TCRBV4S1A1TA0A5B7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TCRBV4S1A1TA0A5B7 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TCRBV4S1A1TA0A5B7 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
TCRBV4S1A1TA0A5B7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TCRBV4S1A1TA0A5B7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TCRBV4S1A1TA0A5B7 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.25■□□□□ 0.83
TCRBV4S1A1TA0A5B7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TCRBV4S1A1TA0A5B7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TCRBV4S1A1TA0A5B7 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TCRBV4S1A1TA0A5B7 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TCRBV4S1A1TA0A5B7 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
TCRBV4S1A1TA0A5B7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV4S1A1TA0A5B7 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.23■□□□□ 0.83
TCRBV4S1A1TA0A5B7 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV4S1A1TA0A5B7 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
TCRBV4S1A1TA0A5B7 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.22■□□□□ 0.83
TCRBV4S1A1TA0A5B7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV4S1A1TA0A5B7 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV4S1A1TA0A5B7 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.22■□□□□ 0.83
TCRBV4S1A1TA0A5B7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV4S1A1TA0A5B7 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV4S1A1TA0A5B7 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV4S1A1TA0A5B7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.21■□□□□ 0.83
TCRBV4S1A1TA0A5B7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TCRBV4S1A1TA0A5B7 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV4S1A1TA0A5B7 LINC00273-201ENST00000539813 1452 ntBASIC20.21■□□□□ 0.83
TCRBV4S1A1TA0A5B7 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.21■□□□□ 0.83
TCRBV4S1A1TA0A5B7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TCRBV4S1A1TA0A5B7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV4S1A1TA0A5B7 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV4S1A1TA0A5B7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TCRBV4S1A1TA0A5B7 AP004833.2-201ENST00000532228 1454 ntBASIC20.2■□□□□ 0.82
TCRBV4S1A1TA0A5B7 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV4S1A1TA0A5B7 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV4S1A1TA0A5B7 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV4S1A1TA0A5B7 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV4S1A1TA0A5B7 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV4S1A1TA0A5B7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV4S1A1TA0A5B7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.19■□□□□ 0.82
TCRBV4S1A1TA0A5B7 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.19■□□□□ 0.82
TCRBV4S1A1TA0A5B7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.19■□□□□ 0.82
TCRBV4S1A1TA0A5B7 AL121749.1-202ENST00000609313 2153 ntBASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV4S1A1TA0A5B7 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV4S1A1TA0A5B7 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.17■□□□□ 0.82
TCRBV4S1A1TA0A5B7 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.17■□□□□ 0.82
TCRBV4S1A1TA0A5B7 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV4S1A1TA0A5B7 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
TCRBV4S1A1TA0A5B7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.16■□□□□ 0.82
TCRBV4S1A1TA0A5B7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV4S1A1TA0A5B7 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV4S1A1TA0A5B7 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV4S1A1TA0A5B7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV4S1A1TA0A5B7 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV4S1A1TA0A5B7 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV4S1A1TA0A5B7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TCRBV4S1A1TA0A5B7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV4S1A1TA0A5B7 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV4S1A1TA0A5B7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV4S1A1TA0A5B7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms