Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC27.57■■■□□ 2
SMIM28A0A1B0GU29 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SMIM28A0A1B0GU29 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SMIM28A0A1B0GU29 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC27.55■■■□□ 2
SMIM28A0A1B0GU29 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC27.55■■■□□ 2
SMIM28A0A1B0GU29 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.55■■■□□ 2
SMIM28A0A1B0GU29 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.55■■■□□ 2
SMIM28A0A1B0GU29 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC27.55■■■□□ 2
SMIM28A0A1B0GU29 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC27.55■■■□□ 2
SMIM28A0A1B0GU29 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC27.55■■■□□ 2
SMIM28A0A1B0GU29 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC27.55■■■□□ 2
SMIM28A0A1B0GU29 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SMIM28A0A1B0GU29 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
SMIM28A0A1B0GU29 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC27.54■■■□□ 2
SMIM28A0A1B0GU29 HSD17B1P1-201ENST00000590052 955 ntBASIC27.54■■■□□ 2
SMIM28A0A1B0GU29 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC27.53■■■□□ 2
SMIM28A0A1B0GU29 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
SMIM28A0A1B0GU29 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC27.52■■■□□ 2
SMIM28A0A1B0GU29 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SMIM28A0A1B0GU29 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.52■■■□□ 2
SMIM28A0A1B0GU29 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SMIM28A0A1B0GU29 RPS2-210ENST00000530225 765 ntTSL 2 BASIC27.52■■■□□ 2
SMIM28A0A1B0GU29 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC27.52■■■□□ 2
SMIM28A0A1B0GU29 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SMIM28A0A1B0GU29 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC27.51■■□□□ 1.99
SMIM28A0A1B0GU29 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
SMIM28A0A1B0GU29 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMIM28A0A1B0GU29 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SMIM28A0A1B0GU29 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMIM28A0A1B0GU29 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SMIM28A0A1B0GU29 CHST11-203ENST00000547956 936 ntTSL 2 BASIC27.49■■□□□ 1.99
SMIM28A0A1B0GU29 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
SMIM28A0A1B0GU29 ABCB10P3-201ENST00000561950 2166 ntBASIC27.48■■□□□ 1.99
SMIM28A0A1B0GU29 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SMIM28A0A1B0GU29 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC27.48■■□□□ 1.99
SMIM28A0A1B0GU29 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC27.47■■□□□ 1.99
SMIM28A0A1B0GU29 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC27.47■■□□□ 1.99
SMIM28A0A1B0GU29 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
SMIM28A0A1B0GU29 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
SMIM28A0A1B0GU29 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC27.47■■□□□ 1.99
SMIM28A0A1B0GU29 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SMIM28A0A1B0GU29 TPT1-202ENST00000379055 948 ntTSL 2 BASIC27.46■■□□□ 1.99
SMIM28A0A1B0GU29 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
SMIM28A0A1B0GU29 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
SMIM28A0A1B0GU29 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC27.45■■□□□ 1.98
SMIM28A0A1B0GU29 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC27.45■■□□□ 1.98
SMIM28A0A1B0GU29 AC148477.6-201ENST00000623746 465 ntBASIC27.45■■□□□ 1.98
SMIM28A0A1B0GU29 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.44■■□□□ 1.98
SMIM28A0A1B0GU29 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SMIM28A0A1B0GU29 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SMIM28A0A1B0GU29 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC27.43■■□□□ 1.98
SMIM28A0A1B0GU29 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SMIM28A0A1B0GU29 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC27.42■■□□□ 1.98
SMIM28A0A1B0GU29 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC27.42■■□□□ 1.98
SMIM28A0A1B0GU29 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SMIM28A0A1B0GU29 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SMIM28A0A1B0GU29 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC27.41■■□□□ 1.98
SMIM28A0A1B0GU29 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SMIM28A0A1B0GU29 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC27.41■■□□□ 1.98
SMIM28A0A1B0GU29 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC27.4■■□□□ 1.98
SMIM28A0A1B0GU29 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SMIM28A0A1B0GU29 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
SMIM28A0A1B0GU29 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC27.39■■□□□ 1.98
SMIM28A0A1B0GU29 BRD4-212ENST00000630599 726 ntTSL 2 BASIC27.39■■□□□ 1.98
SMIM28A0A1B0GU29 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
SMIM28A0A1B0GU29 MIR219A2-201ENST00000608502 1504 ntBASIC27.39■■□□□ 1.98
SMIM28A0A1B0GU29 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC27.39■■□□□ 1.97
SMIM28A0A1B0GU29 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC27.39■■□□□ 1.97
SMIM28A0A1B0GU29 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SMIM28A0A1B0GU29 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC27.38■■□□□ 1.97
SMIM28A0A1B0GU29 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC27.38■■□□□ 1.97
SMIM28A0A1B0GU29 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SMIM28A0A1B0GU29 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 GPX1-201ENST00000419349 1106 ntBASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC27.37■■□□□ 1.97
SMIM28A0A1B0GU29 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC27.36■■□□□ 1.97
SMIM28A0A1B0GU29 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMIM28A0A1B0GU29 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMIM28A0A1B0GU29 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMIM28A0A1B0GU29 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SMIM28A0A1B0GU29 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SMIM28A0A1B0GU29 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC27.35■■□□□ 1.97
SMIM28A0A1B0GU29 CEP120-209ENST00000515110 606 ntTSL 3 BASIC27.34■■□□□ 1.97
SMIM28A0A1B0GU29 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
SMIM28A0A1B0GU29 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SMIM28A0A1B0GU29 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC27.33■■□□□ 1.97
SMIM28A0A1B0GU29 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SMIM28A0A1B0GU29 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
SMIM28A0A1B0GU29 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SMIM28A0A1B0GU29 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SMIM28A0A1B0GU29 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
SMIM28A0A1B0GU29 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC27.31■■□□□ 1.96
SMIM28A0A1B0GU29 AC022413.1-201ENST00000624602 984 ntBASIC27.31■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms