Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 KRT8P17-201ENST00000453110 1448 ntBASIC17.5■□□□□ 0.39
DDX28Q9NUL7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 AL355472.2-201ENST00000422958 438 ntBASIC17.5■□□□□ 0.39
DDX28Q9NUL7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 AC093787.1-201ENST00000450396 207 ntBASIC17.5■□□□□ 0.39
DDX28Q9NUL7 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 AL109923.1-201ENST00000618799 583 ntBASIC17.5■□□□□ 0.39
DDX28Q9NUL7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 AL355802.2-201ENST00000402069 882 ntBASIC17.49■□□□□ 0.39
DDX28Q9NUL7 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.49■□□□□ 0.39
DDX28Q9NUL7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
DDX28Q9NUL7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 KRT8P20-201ENST00000423953 1409 ntBASIC17.48■□□□□ 0.39
DDX28Q9NUL7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 AC104771.1-201ENST00000603335 964 ntBASIC17.48■□□□□ 0.39
DDX28Q9NUL7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
DDX28Q9NUL7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 NFIC-211ENST00000641145 8399 ntBASIC17.47■□□□□ 0.39
DDX28Q9NUL7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 C2orf69P4-201ENST00000565394 541 ntBASIC17.47■□□□□ 0.39
DDX28Q9NUL7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms