Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LIME1Q9H400 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIME1Q9H400 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.8■□□□□ 0.28
LIME1Q9H400 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIME1Q9H400 AP000974.1-201ENST00000623909 2387 ntBASIC16.8■□□□□ 0.28
LIME1Q9H400 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
LIME1Q9H400 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LIME1Q9H400 BX323043.1-201ENST00000641006 1765 ntBASIC16.8■□□□□ 0.28
LIME1Q9H400 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIME1Q9H400 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LIME1Q9H400 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.8■□□□□ 0.28
LIME1Q9H400 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.8■□□□□ 0.28
LIME1Q9H400 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.8■□□□□ 0.28
LIME1Q9H400 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.8■□□□□ 0.28
LIME1Q9H400 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIME1Q9H400 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
LIME1Q9H400 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
LIME1Q9H400 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.8■□□□□ 0.28
LIME1Q9H400 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.8■□□□□ 0.28
LIME1Q9H400 AL138966.2-201ENST00000621997 464 ntBASIC16.8■□□□□ 0.28
LIME1Q9H400 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIME1Q9H400 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIME1Q9H400 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIME1Q9H400 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIME1Q9H400 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
LIME1Q9H400 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
LIME1Q9H400 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.79■□□□□ 0.28
LIME1Q9H400 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 KRT8P17-201ENST00000453110 1448 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.79■□□□□ 0.28
LIME1Q9H400 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.79■□□□□ 0.28
LIME1Q9H400 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.79■□□□□ 0.28
LIME1Q9H400 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.79■□□□□ 0.28
LIME1Q9H400 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.79■□□□□ 0.28
LIME1Q9H400 HMGA1P5-201ENST00000412453 271 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 TSPY5P-201ENST00000426936 936 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 KRT18P48-201ENST00000434763 852 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 AC009947.2-201ENST00000444014 672 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 AC008040.2-201ENST00000461049 708 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.79■□□□□ 0.28
LIME1Q9H400 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.79■□□□□ 0.28
LIME1Q9H400 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LIME1Q9H400 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LIME1Q9H400 AC130371.2-201ENST00000619443 611 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 AC131212.4-201ENST00000623606 975 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 AP000550.4-202ENST00000639755 178 ntBASIC16.79■□□□□ 0.28
LIME1Q9H400 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LIME1Q9H400 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.79■□□□□ 0.28
LIME1Q9H400 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
LIME1Q9H400 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.79■□□□□ 0.28
LIME1Q9H400 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LIME1Q9H400 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIME1Q9H400 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LIME1Q9H400 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
LIME1Q9H400 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 BX119927.1-201ENST00000636596 1552 ntBASIC16.78■□□□□ 0.28
LIME1Q9H400 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.78■□□□□ 0.28
LIME1Q9H400 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.78■□□□□ 0.28
LIME1Q9H400 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.78■□□□□ 0.28
LIME1Q9H400 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.78■□□□□ 0.28
LIME1Q9H400 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.78■□□□□ 0.28
LIME1Q9H400 AC093458.2-201ENST00000623150 629 ntBASIC16.78■□□□□ 0.28
LIME1Q9H400 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.78■□□□□ 0.28
LIME1Q9H400 AC005332.7-201ENST00000614046 2005 ntBASIC16.78■□□□□ 0.28
LIME1Q9H400 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.78■□□□□ 0.28
LIME1Q9H400 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.78■□□□□ 0.28
LIME1Q9H400 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
LIME1Q9H400 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.78■□□□□ 0.28
LIME1Q9H400 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIME1Q9H400 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.78■□□□□ 0.28
LIME1Q9H400 TMEM179-206ENST00000616017 1645 ntBASIC16.78■□□□□ 0.28
LIME1Q9H400 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.77■□□□□ 0.28
LIME1Q9H400 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIME1Q9H400 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIME1Q9H400 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIME1Q9H400 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIME1Q9H400 TREX1-205ENST00000625293 1783 ntBASIC16.77■□□□□ 0.28
LIME1Q9H400 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms