Protein–RNA interactions for Protein: Q96KN3

PKNOX2, Homeobox protein PKNOX2, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2Q96KN3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 MIR3621-201ENST00000580529 85 ntBASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 PCDHB17P-201ENST00000539533 2393 ntBASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PKNOX2Q96KN3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 SERBP1P1-201ENST00000396021 1160 ntBASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 CICP14-201ENST00000629111 2732 ntBASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC20.66■□□□□ 0.9
PKNOX2Q96KN3 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 AL138724.1-201ENST00000606771 1088 ntBASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX2Q96KN3 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PKNOX2Q96KN3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.64■□□□□ 0.9
PKNOX2Q96KN3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.64■□□□□ 0.9
PKNOX2Q96KN3 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PKNOX2Q96KN3 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PKNOX2Q96KN3 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PKNOX2Q96KN3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.64■□□□□ 0.9
PKNOX2Q96KN3 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 AL512631.2-201ENST00000604634 923 ntBASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 MYB-201ENST00000316528 3571 ntTSL 5 BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 MYB-241ENST00000616088 3573 ntTSL 5 BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX2Q96KN3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms