Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 PCDHAC2-203ENST00000615316 3011 ntBASIC16.23■□□□□ 0.19
SPG11Q96JI7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 MIR662-201ENST00000384847 95 ntBASIC16.23■□□□□ 0.19
SPG11Q96JI7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 DRAXINP1-201ENST00000437611 948 ntBASIC16.23■□□□□ 0.19
SPG11Q96JI7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 AL355385.1-201ENST00000606123 409 ntBASIC16.23■□□□□ 0.19
SPG11Q96JI7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.23■□□□□ 0.19
SPG11Q96JI7 KRT18P1-202ENST00000452408 1331 ntBASIC16.23■□□□□ 0.19
SPG11Q96JI7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPG11Q96JI7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 MRPL3P1-201ENST00000400109 1033 ntBASIC16.22■□□□□ 0.19
SPG11Q96JI7 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 BX640515.1-201ENST00000617215 977 ntBASIC16.22■□□□□ 0.19
SPG11Q96JI7 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SPG11Q96JI7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPG11Q96JI7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 TSPY22P-201ENST00000427496 604 ntBASIC16.21■□□□□ 0.19
SPG11Q96JI7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 AC120114.3-201ENST00000611923 658 ntBASIC16.21■□□□□ 0.19
SPG11Q96JI7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 AL031008.1-201ENST00000619963 541 ntBASIC16.21■□□□□ 0.19
SPG11Q96JI7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.21■□□□□ 0.19
SPG11Q96JI7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SPG11Q96JI7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SPG11Q96JI7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.21■□□□□ 0.18
SPG11Q96JI7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
SPG11Q96JI7 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
SPG11Q96JI7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SPG11Q96JI7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.2■□□□□ 0.18
SPG11Q96JI7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SPG11Q96JI7 FAM220CP-201ENST00000395253 831 ntBASIC16.2■□□□□ 0.18
SPG11Q96JI7 TSPY12P-201ENST00000421279 868 ntBASIC16.2■□□□□ 0.18
SPG11Q96JI7 PMS2P1-201ENST00000431037 1228 ntBASIC16.2■□□□□ 0.18
SPG11Q96JI7 SEC1P-202ENST00000473944 940 ntBASIC16.2■□□□□ 0.18
SPG11Q96JI7 RNA5SP419-201ENST00000515908 135 ntBASIC16.2■□□□□ 0.18
SPG11Q96JI7 RNF126P1-202ENST00000569893 925 ntBASIC16.2■□□□□ 0.18
SPG11Q96JI7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.2■□□□□ 0.18
SPG11Q96JI7 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.2■□□□□ 0.18
SPG11Q96JI7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms