Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RBM17P1-201ENST00000453646 1190 ntBASIC19.63■□□□□ 0.73
SKA1Q96BD8 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.63■□□□□ 0.73
SKA1Q96BD8 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 CR392000.1-201ENST00000624770 1228 ntBASIC19.63■□□□□ 0.73
SKA1Q96BD8 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 KRT16P1-201ENST00000399124 1418 ntBASIC19.62■□□□□ 0.73
SKA1Q96BD8 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 RCN1P1-201ENST00000400413 996 ntBASIC19.62■□□□□ 0.73
SKA1Q96BD8 TMPOP1-202ENST00000424642 1267 ntBASIC19.62■□□□□ 0.73
SKA1Q96BD8 AC005363.2-201ENST00000618631 242 ntBASIC19.62■□□□□ 0.73
SKA1Q96BD8 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA1Q96BD8 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.62■□□□□ 0.73
SKA1Q96BD8 PTBP1P-201ENST00000554374 1601 ntBASIC19.62■□□□□ 0.73
SKA1Q96BD8 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA1Q96BD8 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA1Q96BD8 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA1Q96BD8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA1Q96BD8 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 AC145285.6-201ENST00000604632 637 ntBASIC19.61■□□□□ 0.73
SKA1Q96BD8 REXO1L10P-201ENST00000615707 1290 ntBASIC19.61■□□□□ 0.73
SKA1Q96BD8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA1Q96BD8 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA1Q96BD8 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA1Q96BD8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SKA1Q96BD8 AP006587.1-201ENST00000534129 1502 ntBASIC19.61■□□□□ 0.73
SKA1Q96BD8 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.6■□□□□ 0.73
SKA1Q96BD8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 NAPSB-206ENST00000562112 1266 ntBASIC19.6■□□□□ 0.73
SKA1Q96BD8 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.6■□□□□ 0.73
SKA1Q96BD8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA1Q96BD8 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 MIR1238-201ENST00000408483 83 ntBASIC19.59■□□□□ 0.73
SKA1Q96BD8 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms