Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.56■□□□□ 0.72
SHROOM3Q8TF72 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHROOM3Q8TF72 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 TMPOP1-202ENST00000424642 1267 ntBASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 AL049597.2-201ENST00000565575 961 ntBASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 AC131212.4-201ENST00000623606 975 ntBASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 TNXA-203ENST00000507684 2038 ntBASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.55■□□□□ 0.72
SHROOM3Q8TF72 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 AC004951.3-201ENST00000418645 1148 ntBASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 AL390955.1-201ENST00000428694 934 ntBASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 AC091390.4-202ENST00000476426 537 ntBASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 AP000974.1-201ENST00000623909 2387 ntBASIC19.54■□□□□ 0.72
SHROOM3Q8TF72 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 AC093503.3-201ENST00000624917 2352 ntBASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SHROOM3Q8TF72 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 KRT8P11-201ENST00000409686 1436 ntBASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 FAM207BP-201ENST00000447172 505 ntBASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHROOM3Q8TF72 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 AC004980.1-204ENST00000429707 299 ntBASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 B3GAT3P1-201ENST00000471720 806 ntBASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms