Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 AC005332.7-201ENST00000614046 2005 ntBASIC16.94■□□□□ 0.3
SKA3Q8IX90 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 SDHAP1-207ENST00000440850 2000 ntBASIC16.93■□□□□ 0.3
SKA3Q8IX90 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 NIFKP9-201ENST00000419265 221 ntBASIC16.93■□□□□ 0.3
SKA3Q8IX90 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 RPS2P4-201ENST00000476944 856 ntBASIC16.93■□□□□ 0.3
SKA3Q8IX90 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 AL160286.2-201ENST00000567150 934 ntBASIC16.93■□□□□ 0.3
SKA3Q8IX90 AL353708.3-201ENST00000610272 989 ntBASIC16.93■□□□□ 0.3
SKA3Q8IX90 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.93■□□□□ 0.3
SKA3Q8IX90 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SKA3Q8IX90 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 AL032819.2-201ENST00000624543 2162 ntBASIC16.92■□□□□ 0.3
SKA3Q8IX90 AC098818.2-201ENST00000564925 2320 ntBASIC16.92■□□□□ 0.3
SKA3Q8IX90 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.92■□□□□ 0.3
SKA3Q8IX90 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SKA3Q8IX90 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 AL135905.2-201ENST00000584934 1404 ntBASIC16.91■□□□□ 0.3
SKA3Q8IX90 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 KSR1P1-201ENST00000446298 240 ntBASIC16.91■□□□□ 0.3
SKA3Q8IX90 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 AL445675.2-201ENST00000620291 557 ntBASIC16.91■□□□□ 0.3
SKA3Q8IX90 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 AIRN-201ENST00000601203 4374 ntBASIC16.91■□□□□ 0.3
SKA3Q8IX90 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms