Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LIM2P55344 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LIM2P55344 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.19■□□□□ 0.5
LIM2P55344 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.19■□□□□ 0.5
LIM2P55344 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.19■□□□□ 0.5
LIM2P55344 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.19■□□□□ 0.5
LIM2P55344 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
LIM2P55344 AC066615.1-201ENST00000640911 628 ntBASIC18.19■□□□□ 0.5
LIM2P55344 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIM2P55344 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.19■□□□□ 0.5
LIM2P55344 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.19■□□□□ 0.5
LIM2P55344 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.18■□□□□ 0.5
LIM2P55344 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
LIM2P55344 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LIM2P55344 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.18■□□□□ 0.5
LIM2P55344 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIM2P55344 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.18■□□□□ 0.5
LIM2P55344 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIM2P55344 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIM2P55344 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
LIM2P55344 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIM2P55344 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.18■□□□□ 0.5
LIM2P55344 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.18■□□□□ 0.5
LIM2P55344 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.18■□□□□ 0.5
LIM2P55344 AC026271.3-201ENST00000571884 352 ntBASIC18.18■□□□□ 0.5
LIM2P55344 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.18■□□□□ 0.5
LIM2P55344 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIM2P55344 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.18■□□□□ 0.5
LIM2P55344 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIM2P55344 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.18■□□□□ 0.5
LIM2P55344 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIM2P55344 KRT8P41-201ENST00000533985 1514 ntBASIC18.18■□□□□ 0.5
LIM2P55344 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LIM2P55344 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.17■□□□□ 0.5
LIM2P55344 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.17■□□□□ 0.5
LIM2P55344 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LIM2P55344 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.17■□□□□ 0.5
LIM2P55344 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.17■□□□□ 0.5
LIM2P55344 TEX21P-204ENST00000641479 1693 ntBASIC18.17■□□□□ 0.5
LIM2P55344 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LIM2P55344 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
LIM2P55344 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.17■□□□□ 0.5
LIM2P55344 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.17■□□□□ 0.5
LIM2P55344 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.17■□□□□ 0.5
LIM2P55344 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIM2P55344 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LIM2P55344 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.16■□□□□ 0.5
LIM2P55344 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
LIM2P55344 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LIM2P55344 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
LIM2P55344 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.16■□□□□ 0.5
LIM2P55344 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.16■□□□□ 0.5
LIM2P55344 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 AC093827.2-201ENST00000512654 315 ntBASIC18.16■□□□□ 0.5
LIM2P55344 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.16■□□□□ 0.5
LIM2P55344 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.16■□□□□ 0.5
LIM2P55344 RCC2P6-201ENST00000526625 1557 ntBASIC18.16■□□□□ 0.5
LIM2P55344 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.16■□□□□ 0.5
LIM2P55344 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LIM2P55344 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIM2P55344 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.15■□□□□ 0.5
LIM2P55344 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LIM2P55344 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LIM2P55344 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
LIM2P55344 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LIM2P55344 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
LIM2P55344 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LIM2P55344 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.15■□□□□ 0.5
LIM2P55344 NUDT16P1-203ENST00000513809 620 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms