Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCNFP41002 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCNFP41002 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCNFP41002 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCNFP41002 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCNFP41002 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.25■□□□□ 0.67
CCNFP41002 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCNFP41002 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCNFP41002 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCNFP41002 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCNFP41002 AC124283.5-201ENST00000624661 1809 ntBASIC19.25■□□□□ 0.67
CCNFP41002 WIZP1-201ENST00000531444 2299 ntBASIC19.25■□□□□ 0.67
CCNFP41002 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.25■□□□□ 0.67
CCNFP41002 FZD10-202ENST00000539839 3282 ntBASIC19.24■□□□□ 0.67
CCNFP41002 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNFP41002 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNFP41002 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 SDHAP1-207ENST00000440850 2000 ntBASIC19.24■□□□□ 0.67
CCNFP41002 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCNFP41002 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNFP41002 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNFP41002 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CCNFP41002 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCNFP41002 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNFP41002 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNFP41002 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.24■□□□□ 0.67
CCNFP41002 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNFP41002 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.24■□□□□ 0.67
CCNFP41002 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNFP41002 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCNFP41002 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CCNFP41002 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 AC135050.7-201ENST00000624508 2218 ntBASIC19.23■□□□□ 0.67
CCNFP41002 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.23■□□□□ 0.67
CCNFP41002 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCNFP41002 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.23■□□□□ 0.67
CCNFP41002 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 POU5F1P3-201ENST00000428824 1078 ntBASIC19.23■□□□□ 0.67
CCNFP41002 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CCNFP41002 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 AC090164.3-201ENST00000610780 2143 ntBASIC19.23■□□□□ 0.67
CCNFP41002 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNFP41002 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCNFP41002 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNFP41002 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNFP41002 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.22■□□□□ 0.67
CCNFP41002 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.22■□□□□ 0.67
CCNFP41002 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNFP41002 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNFP41002 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.22■□□□□ 0.67
CCNFP41002 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.22■□□□□ 0.67
CCNFP41002 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.22■□□□□ 0.67
CCNFP41002 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.22■□□□□ 0.67
CCNFP41002 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms