Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC012615.1-201ENST00000565797 1299 ntBASIC25.34■■□□□ 1.65
COL18A1P39060 AC011498.5-201ENST00000592027 486 ntBASIC25.34■■□□□ 1.65
COL18A1P39060 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC25.34■■□□□ 1.65
COL18A1P39060 AC104692.2-201ENST00000603054 253 ntBASIC25.34■■□□□ 1.65
COL18A1P39060 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
COL18A1P39060 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
COL18A1P39060 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL18A1P39060 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC25.34■■□□□ 1.65
COL18A1P39060 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL18A1P39060 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
COL18A1P39060 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
COL18A1P39060 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC25.33■■□□□ 1.65
COL18A1P39060 DRAXINP1-201ENST00000437611 948 ntBASIC25.33■■□□□ 1.65
COL18A1P39060 AC009078.2-202ENST00000463353 338 ntBASIC25.33■■□□□ 1.65
COL18A1P39060 CIB2-208ENST00000560618 804 ntTSL 2 BASIC25.33■■□□□ 1.65
COL18A1P39060 TBCB-205ENST00000585746 875 ntTSL 3 BASIC25.33■■□□□ 1.65
COL18A1P39060 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL18A1P39060 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC25.33■■□□□ 1.65
COL18A1P39060 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
COL18A1P39060 AL391807.1-203ENST00000604392 2365 ntBASIC25.33■■□□□ 1.65
COL18A1P39060 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL18A1P39060 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL18A1P39060 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL18A1P39060 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL18A1P39060 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
COL18A1P39060 AL845331.1-201ENST00000424978 1190 ntBASIC25.33■■□□□ 1.65
COL18A1P39060 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC25.33■■□□□ 1.65
COL18A1P39060 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL18A1P39060 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC25.33■■□□□ 1.65
COL18A1P39060 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL18A1P39060 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
COL18A1P39060 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.64
COL18A1P39060 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL18A1P39060 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC25.32■■□□□ 1.64
COL18A1P39060 GAD2-202ENST00000376248 680 ntTSL 5 BASIC25.32■■□□□ 1.64
COL18A1P39060 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC25.32■■□□□ 1.64
COL18A1P39060 AL136038.4-201ENST00000603606 1261 ntBASIC25.32■■□□□ 1.64
COL18A1P39060 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
COL18A1P39060 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL18A1P39060 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL18A1P39060 GABARAPL3-202ENST00000624044 1851 ntBASIC25.32■■□□□ 1.64
COL18A1P39060 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL18A1P39060 TSPY19P-201ENST00000418461 509 ntBASIC25.31■■□□□ 1.64
COL18A1P39060 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC25.31■■□□□ 1.64
COL18A1P39060 TSPY18P-201ENST00000441642 509 ntBASIC25.31■■□□□ 1.64
COL18A1P39060 FAAHP1-202ENST00000446499 1238 ntBASIC25.31■■□□□ 1.64
COL18A1P39060 MIR3917-201ENST00000580971 93 ntBASIC25.31■■□□□ 1.64
COL18A1P39060 SLC25A6P4-201ENST00000586535 553 ntBASIC25.31■■□□□ 1.64
COL18A1P39060 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC25.31■■□□□ 1.64
COL18A1P39060 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL18A1P39060 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL18A1P39060 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL18A1P39060 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL18A1P39060 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC25.31■■□□□ 1.64
COL18A1P39060 TSPY12P-201ENST00000421279 868 ntBASIC25.31■■□□□ 1.64
COL18A1P39060 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC25.31■■□□□ 1.64
COL18A1P39060 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL18A1P39060 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL18A1P39060 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC25.3■■□□□ 1.64
COL18A1P39060 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL18A1P39060 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
COL18A1P39060 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC25.3■■□□□ 1.64
COL18A1P39060 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC25.3■■□□□ 1.64
COL18A1P39060 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC25.3■■□□□ 1.64
COL18A1P39060 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
COL18A1P39060 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL18A1P39060 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL18A1P39060 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC25.3■■□□□ 1.64
COL18A1P39060 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC25.3■■□□□ 1.64
COL18A1P39060 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC25.3■■□□□ 1.64
COL18A1P39060 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC25.3■■□□□ 1.64
COL18A1P39060 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
COL18A1P39060 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC25.3■■□□□ 1.64
COL18A1P39060 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
COL18A1P39060 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL18A1P39060 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL18A1P39060 MIR662-201ENST00000384847 95 ntBASIC25.29■■□□□ 1.64
COL18A1P39060 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC25.29■■□□□ 1.64
COL18A1P39060 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC25.29■■□□□ 1.64
COL18A1P39060 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC25.29■■□□□ 1.64
COL18A1P39060 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC25.29■■□□□ 1.64
COL18A1P39060 AL671883.3-201ENST00000603274 991 ntBASIC25.29■■□□□ 1.64
COL18A1P39060 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC25.29■■□□□ 1.64
COL18A1P39060 AC004263.2-201ENST00000617183 678 ntBASIC25.29■■□□□ 1.64
COL18A1P39060 TCF3P1-201ENST00000423021 1937 ntBASIC25.29■■□□□ 1.64
COL18A1P39060 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC25.29■■□□□ 1.64
COL18A1P39060 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC25.29■■□□□ 1.64
COL18A1P39060 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 AC099778.1-201ENST00000568593 1911 ntBASIC25.29■■□□□ 1.64
COL18A1P39060 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL18A1P39060 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
COL18A1P39060 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms