Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.21■□□□□ 0.67
SHOX2O60902 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.21■□□□□ 0.67
SHOX2O60902 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.21■□□□□ 0.67
SHOX2O60902 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.21■□□□□ 0.67
SHOX2O60902 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.2■□□□□ 0.66
SHOX2O60902 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.2■□□□□ 0.66
SHOX2O60902 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 RBM17P2-201ENST00000616397 1405 ntBASIC19.2■□□□□ 0.66
SHOX2O60902 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.2■□□□□ 0.66
SHOX2O60902 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SHOX2O60902 AC105265.2-201ENST00000467189 838 ntBASIC19.2■□□□□ 0.66
SHOX2O60902 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.2■□□□□ 0.66
SHOX2O60902 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
SHOX2O60902 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.2■□□□□ 0.66
SHOX2O60902 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.2■□□□□ 0.66
SHOX2O60902 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOX2O60902 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.2■□□□□ 0.66
SHOX2O60902 AC008406.3-201ENST00000620001 1374 ntBASIC19.19■□□□□ 0.66
SHOX2O60902 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
SHOX2O60902 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.19■□□□□ 0.66
SHOX2O60902 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 AP001330.3-201ENST00000520123 633 ntBASIC19.19■□□□□ 0.66
SHOX2O60902 AC027682.1-201ENST00000562846 899 ntBASIC19.19■□□□□ 0.66
SHOX2O60902 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.19■□□□□ 0.66
SHOX2O60902 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.19■□□□□ 0.66
SHOX2O60902 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.19■□□□□ 0.66
SHOX2O60902 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.19■□□□□ 0.66
SHOX2O60902 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SHOX2O60902 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.19■□□□□ 0.66
SHOX2O60902 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHOX2O60902 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.18■□□□□ 0.66
SHOX2O60902 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SHOX2O60902 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SHOX2O60902 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.18■□□□□ 0.66
SHOX2O60902 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.18■□□□□ 0.66
SHOX2O60902 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SHOX2O60902 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.18■□□□□ 0.66
SHOX2O60902 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.18■□□□□ 0.66
SHOX2O60902 AL355001.2-201ENST00000620617 1191 ntBASIC19.18■□□□□ 0.66
SHOX2O60902 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.18■□□□□ 0.66
SHOX2O60902 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHOX2O60902 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHOX2O60902 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOX2O60902 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOX2O60902 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SHOX2O60902 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.17■□□□□ 0.66
SHOX2O60902 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.17■□□□□ 0.66
SHOX2O60902 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.17■□□□□ 0.66
SHOX2O60902 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHOX2O60902 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.17■□□□□ 0.66
SHOX2O60902 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOX2O60902 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.17■□□□□ 0.66
SHOX2O60902 YBX1P1-201ENST00000445822 960 ntBASIC19.17■□□□□ 0.66
SHOX2O60902 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SHOX2O60902 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHOX2O60902 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms