Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
HMGN4O00479 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
HMGN4O00479 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.83■□□□□ 0.44
HMGN4O00479 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGN4O00479 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGN4O00479 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HMGN4O00479 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGN4O00479 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGN4O00479 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGN4O00479 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
HMGN4O00479 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGN4O00479 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGN4O00479 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.82■□□□□ 0.44
HMGN4O00479 AL023875.1-201ENST00000640777 796 ntBASIC17.82■□□□□ 0.44
HMGN4O00479 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGN4O00479 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGN4O00479 AC093525.10-201ENST00000625130 1569 ntBASIC17.82■□□□□ 0.44
HMGN4O00479 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
HMGN4O00479 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGN4O00479 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGN4O00479 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGN4O00479 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
HMGN4O00479 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGN4O00479 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGN4O00479 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
HMGN4O00479 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGN4O00479 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGN4O00479 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGN4O00479 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGN4O00479 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HMGN4O00479 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.81■□□□□ 0.44
HMGN4O00479 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGN4O00479 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGN4O00479 TSPY21P-201ENST00000433481 731 ntBASIC17.81■□□□□ 0.44
HMGN4O00479 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGN4O00479 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
HMGN4O00479 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.81■□□□□ 0.44
HMGN4O00479 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGN4O00479 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.81■□□□□ 0.44
HMGN4O00479 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGN4O00479 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGN4O00479 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
HMGN4O00479 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
HMGN4O00479 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGN4O00479 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGN4O00479 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGN4O00479 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
HMGN4O00479 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGN4O00479 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGN4O00479 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.8■□□□□ 0.44
HMGN4O00479 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
HMGN4O00479 ESRRAP1-201ENST00000400596 1257 ntBASIC17.8■□□□□ 0.44
HMGN4O00479 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGN4O00479 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGN4O00479 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGN4O00479 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGN4O00479 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGN4O00479 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGN4O00479 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGN4O00479 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
HMGN4O00479 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGN4O00479 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGN4O00479 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 Z98044.1-201ENST00000632503 1764 ntBASIC17.79■□□□□ 0.44
HMGN4O00479 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGN4O00479 AL512353.2-201ENST00000448759 1962 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms