Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 AC113410.3-201ENST00000623366 203 ntBASIC18.55■□□□□ 0.56
VPS4AQ9UN37 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VPS4AQ9UN37 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 AL032819.2-201ENST00000624543 2162 ntBASIC18.54■□□□□ 0.56
VPS4AQ9UN37 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 KRT18P35-201ENST00000510488 1269 ntBASIC18.54■□□□□ 0.56
VPS4AQ9UN37 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 AC012306.2-201ENST00000609350 630 ntBASIC18.54■□□□□ 0.56
VPS4AQ9UN37 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS4AQ9UN37 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 AC018553.1-201ENST00000616682 1458 ntBASIC18.53■□□□□ 0.56
VPS4AQ9UN37 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 KRASP1-201ENST00000407852 552 ntBASIC18.53■□□□□ 0.56
VPS4AQ9UN37 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 TSPY15P-201ENST00000457163 923 ntBASIC18.53■□□□□ 0.56
VPS4AQ9UN37 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 AL355075.4-201ENST00000554988 638 ntBASIC18.53■□□□□ 0.56
VPS4AQ9UN37 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 AL590326.2-201ENST00000625139 305 ntBASIC18.53■□□□□ 0.56
VPS4AQ9UN37 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS4AQ9UN37 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms