Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 AC005181.1-201ENST00000604782 1256 ntBASIC17.54■□□□□ 0.4
DDX28Q9NUL7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 AL589743.5-201ENST00000616611 1050 ntBASIC17.53■□□□□ 0.4
DDX28Q9NUL7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
DDX28Q9NUL7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.52■□□□□ 0.4
DDX28Q9NUL7 AC133552.2-202ENST00000575694 574 ntBASIC17.52■□□□□ 0.4
DDX28Q9NUL7 CROCCP1-201ENST00000426910 5675 ntBASIC17.52■□□□□ 0.4
DDX28Q9NUL7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
DDX28Q9NUL7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
DDX28Q9NUL7 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
DDX28Q9NUL7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
DDX28Q9NUL7 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.52■□□□□ 0.39
DDX28Q9NUL7 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
DDX28Q9NUL7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
DDX28Q9NUL7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
DDX28Q9NUL7 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 TMEM179-206ENST00000616017 1645 ntBASIC17.51■□□□□ 0.39
DDX28Q9NUL7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 RAP2CP1-201ENST00000605103 478 ntBASIC17.51■□□□□ 0.39
DDX28Q9NUL7 AL031963.3-201ENST00000606441 850 ntBASIC17.51■□□□□ 0.39
DDX28Q9NUL7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.51■□□□□ 0.39
DDX28Q9NUL7 AC079598.2-202ENST00000546624 1451 ntBASIC17.5■□□□□ 0.39
DDX28Q9NUL7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
DDX28Q9NUL7 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms