Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 AC006058.3-201ENST00000606217 1069 ntBASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 AL121829.2-201ENST00000620908 328 ntBASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 ITM2C-210ENST00000620962 501 ntBASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
NUCKS1Q9H1E3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 TMEM191A-211ENST00000637163 1067 ntBASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 IRX1P1-201ENST00000438849 1838 ntBASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
NUCKS1Q9H1E3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 TUBB8P6-201ENST00000436895 1288 ntBASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 AC120498.8-201ENST00000614275 531 ntBASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUCKS1Q9H1E3 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
NUCKS1Q9H1E3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
NUCKS1Q9H1E3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
NUCKS1Q9H1E3 Z98044.1-201ENST00000632503 1764 ntBASIC20.77■□□□□ 0.91
NUCKS1Q9H1E3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
NUCKS1Q9H1E3 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.77■□□□□ 0.91
NUCKS1Q9H1E3 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NUCKS1Q9H1E3 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NUCKS1Q9H1E3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 KRT18P29-201ENST00000397031 1267 ntBASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 AC128676.1-201ENST00000454392 318 ntBASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 AL031598.1-201ENST00000561511 1773 ntBASIC20.76■□□□□ 0.91
NUCKS1Q9H1E3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms