Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 AC131212.1-201ENST00000613771 668 ntBASIC18.08■□□□□ 0.48
NR1H4Q96RI1 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
NR1H4Q96RI1 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 AC012317.2-201ENST00000623305 2251 ntBASIC18.06■□□□□ 0.48
NR1H4Q96RI1 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 UNC93B3-201ENST00000308076 687 ntBASIC18.06■□□□□ 0.48
NR1H4Q96RI1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.06■□□□□ 0.48
NR1H4Q96RI1 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 AC053503.5-201ENST00000601508 636 ntBASIC18.05■□□□□ 0.48
NR1H4Q96RI1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NR1H4Q96RI1 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms