Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 LINC01465-201ENST00000408887 1940 ntBASIC16.97■□□□□ 0.31
SKA3Q8IX90 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SKA3Q8IX90 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SKA3Q8IX90 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SKA3Q8IX90 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SKA3Q8IX90 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SKA3Q8IX90 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SKA3Q8IX90 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SKA3Q8IX90 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SKA3Q8IX90 AP002982.1-201ENST00000492365 877 ntBASIC16.96■□□□□ 0.31
SKA3Q8IX90 RARRES2P10-201ENST00000564312 460 ntBASIC16.96■□□□□ 0.31
SKA3Q8IX90 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SKA3Q8IX90 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.96■□□□□ 0.31
SKA3Q8IX90 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SKA3Q8IX90 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SKA3Q8IX90 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SKA3Q8IX90 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SKA3Q8IX90 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SKA3Q8IX90 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.96■□□□□ 0.3
SKA3Q8IX90 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SKA3Q8IX90 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SKA3Q8IX90 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.95■□□□□ 0.3
SKA3Q8IX90 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 AL353807.1-201ENST00000427475 662 ntBASIC16.94■□□□□ 0.3
SKA3Q8IX90 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 AF186192.3-201ENST00000583427 947 ntBASIC16.94■□□□□ 0.3
SKA3Q8IX90 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.94■□□□□ 0.3
SKA3Q8IX90 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SKA3Q8IX90 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms