Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 AC008764.6-201ENST00000595909 2069 ntBASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28AQ8IWP9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28AQ8IWP9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 GATM-206ENST00000558336 1522 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28AQ8IWP9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 AC010141.3-201ENST00000456659 717 ntBASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 AC087239.1-201ENST00000622671 572 ntBASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28AQ8IWP9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms