Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
UBE3BQ7Z3V4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
UBE3BQ7Z3V4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
UBE3BQ7Z3V4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 GXYLT1P6-201ENST00000456472 1187 ntBASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 NME3-204ENST00000563498 920 ntTSL 2 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 AL590326.2-201ENST00000625139 305 ntBASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
UBE3BQ7Z3V4 AL158211.5-201ENST00000623583 2518 ntBASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UBE3BQ7Z3V4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 TBC1D3P2-202ENST00000577902 1649 ntBASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 CD70-202ENST00000423145 881 ntTSL 2 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 AC117947.1-201ENST00000427448 529 ntBASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 TSPY21P-201ENST00000433481 731 ntBASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 BX664615.1-201ENST00000443558 458 ntBASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 WWOX-216ENST00000569818 525 ntBASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UBE3BQ7Z3V4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 Z82202.1-201ENST00000623446 1880 ntBASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC23.92■■□□□ 1.42
UBE3BQ7Z3V4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.91■■□□□ 1.42
UBE3BQ7Z3V4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms