Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 STX7-201ENST00000367937 1090 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC58Q4VC31 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 CNN2P6-201ENST00000439038 900 ntBASIC17.12■□□□□ 0.33
CCDC58Q4VC31 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 AC008694.1-202ENST00000636953 945 ntBASIC17.12■□□□□ 0.33
CCDC58Q4VC31 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC58Q4VC31 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 ZNF815P-204ENST00000434898 1737 ntBASIC17.11■□□□□ 0.33
CCDC58Q4VC31 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC58Q4VC31 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 PRORSD1P-202ENST00000563365 2154 ntBASIC17.1■□□□□ 0.33
CCDC58Q4VC31 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 AC093525.10-201ENST00000625130 1569 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms