Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 AC026396.1-201ENST00000419388 421 ntBASIC16.07■□□□□ 0.16
ABCA1O95477 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.07■□□□□ 0.16
ABCA1O95477 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
ABCA1O95477 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.07■□□□□ 0.16
ABCA1O95477 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.07■□□□□ 0.16
ABCA1O95477 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
ABCA1O95477 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA1O95477 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
ABCA1O95477 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA1O95477 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
ABCA1O95477 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ABCA1O95477 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ABCA1O95477 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.06■□□□□ 0.16
ABCA1O95477 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA1O95477 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.06■□□□□ 0.16
ABCA1O95477 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
ABCA1O95477 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.06■□□□□ 0.16
ABCA1O95477 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA1O95477 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA1O95477 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.06■□□□□ 0.16
ABCA1O95477 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.06■□□□□ 0.16
ABCA1O95477 AL023973.1-201ENST00000624619 620 ntBASIC16.06■□□□□ 0.16
ABCA1O95477 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA1O95477 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
ABCA1O95477 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ABCA1O95477 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA1O95477 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA1O95477 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA1O95477 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
ABCA1O95477 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
ABCA1O95477 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.05■□□□□ 0.16
ABCA1O95477 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
ABCA1O95477 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA1O95477 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA1O95477 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
ABCA1O95477 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 AC141257.4-201ENST00000634557 245 ntBASIC16.05■□□□□ 0.16
ABCA1O95477 AC136944.6-201ENST00000634818 245 ntBASIC16.05■□□□□ 0.16
ABCA1O95477 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.05■□□□□ 0.16
ABCA1O95477 HLA-A-209ENST00000638375 975 ntBASIC16.05■□□□□ 0.16
ABCA1O95477 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA1O95477 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.05■□□□□ 0.16
ABCA1O95477 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA1O95477 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA1O95477 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.05■□□□□ 0.16
ABCA1O95477 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA1O95477 KRT8P10-201ENST00000450021 1447 ntBASIC16.05■□□□□ 0.16
ABCA1O95477 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.05■□□□□ 0.16
ABCA1O95477 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA1O95477 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.04■□□□□ 0.16
ABCA1O95477 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.04■□□□□ 0.16
ABCA1O95477 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
ABCA1O95477 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.04■□□□□ 0.16
ABCA1O95477 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
ABCA1O95477 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.04■□□□□ 0.16
ABCA1O95477 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ABCA1O95477 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA1O95477 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms