Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 AC093525.10-201ENST00000625130 1569 ntBASIC14.04□□□□□ -0.16
SMKR1H3BMG3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 AC020916.1-201ENST00000587762 1774 ntBASIC14.04□□□□□ -0.16
SMKR1H3BMG3 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC14.04□□□□□ -0.16
SMKR1H3BMG3 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 AC106739.1-201ENST00000617035 715 ntBASIC14.03□□□□□ -0.16
SMKR1H3BMG3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SMKR1H3BMG3 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC14.02□□□□□ -0.16
SMKR1H3BMG3 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms