Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 TSPY21P-201ENST00000433481 731 ntBASIC19.19■□□□□ 0.66
TREX1Q9NSU2 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TREX1Q9NSU2 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 Z85996.1-201ENST00000494644 937 ntBASIC19.18■□□□□ 0.66
TREX1Q9NSU2 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 AL445675.2-201ENST00000620291 557 ntBASIC19.18■□□□□ 0.66
TREX1Q9NSU2 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TREX1Q9NSU2 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.17■□□□□ 0.66
TREX1Q9NSU2 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.17■□□□□ 0.66
TREX1Q9NSU2 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 TSPY23P-201ENST00000440136 739 ntBASIC19.17■□□□□ 0.66
TREX1Q9NSU2 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TREX1Q9NSU2 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 C1QBPP2-201ENST00000528754 825 ntBASIC19.16■□□□□ 0.66
TREX1Q9NSU2 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TREX1Q9NSU2 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms