Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.73
TRIM56Q9BRZ2 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM56Q9BRZ2 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 ABHD17AP1-201ENST00000358206 933 ntBASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 AC069152.1-201ENST00000438030 544 ntBASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM56Q9BRZ2 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 NEFHP1-201ENST00000412845 2629 ntBASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM56Q9BRZ2 AC141586.3-201ENST00000562166 1838 ntBASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 AC104417.2-201ENST00000562989 1793 ntBASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 AC120498.8-201ENST00000614275 531 ntBASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 AP006587.1-201ENST00000534129 1502 ntBASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM56Q9BRZ2 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms