Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SLC3A2-207ENST00000535768 597 ntTSL 511.57□□□□□ -0.563e-10■■□□□ 11.9
DDX55Q8NHQ9 EIF1-201ENST00000310837 1120 ntTSL 1 (best)10.97□□□□□ -0.651e-12■■□□□ 11.9
DDX55Q8NHQ9 TECR-208ENST00000596164 245 ntTSL 38.94□□□□□ -0.981e-8■■□□□ 11.9
DDX55Q8NHQ9 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.161e-12■■□□□ 11.9
DDX55Q8NHQ9 EIF1-205ENST00000482111 1428 ntTSL 27.37□□□□□ -1.231e-12■■□□□ 11.9
DDX55Q8NHQ9 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC7.27□□□□□ -1.253e-10■■□□□ 11.9
DDX55Q8NHQ9 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC5.63□□□□□ -1.513e-10■■□□□ 11.9
DDX55Q8NHQ9 TRIM28-213ENST00000598355 714 ntTSL 219.71■□□□□ 0.753e-21■■□□□ 11.9
DDX55Q8NHQ9 BAX-207ENST00000502487 1346 ntTSL 1 (best)32.3■■■□□ 2.761e-6■■□□□ 11.9
DDX55Q8NHQ9 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.58e-7■■□□□ 11.9
DDX55Q8NHQ9 BAX-211ENST00000513545 775 ntTSL 326.99■■□□□ 1.911e-6■■□□□ 11.9
DDX55Q8NHQ9 BAX-209ENST00000506183 383 ntTSL 1 (best)20.91■□□□□ 0.941e-6■■□□□ 11.9
DDX55Q8NHQ9 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC20.49■□□□□ 0.871e-6■■□□□ 11.9
DDX55Q8NHQ9 BAX-204ENST00000356483 677 ntTSL 1 (best)20.36■□□□□ 0.851e-6■■□□□ 11.9
DDX55Q8NHQ9 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC20.36■□□□□ 0.851e-6■■□□□ 11.9
DDX55Q8NHQ9 BAX-205ENST00000391871 687 ntTSL 5 BASIC16.84■□□□□ 0.298e-7■■□□□ 11.9
DDX55Q8NHQ9 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.8■□□□□ 0.288e-7■■□□□ 11.9
DDX55Q8NHQ9 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.015e-7■■□□□ 11.9
DDX55Q8NHQ9 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.491e-7■■□□□ 11.9
DDX55Q8NHQ9 PPP1R15A-202ENST00000600406 1725 nt17.29■□□□□ 0.361e-7■■□□□ 11.9
DDX55Q8NHQ9 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.397e-7■■□□□ 11.9
DDX55Q8NHQ9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC28.66■■■□□ 2.187e-7■■□□□ 11.9
DDX55Q8NHQ9 TMEM150A-209ENST00000444380 1810 ntTSL 527.9■■■□□ 2.067e-7■■□□□ 11.9
DDX55Q8NHQ9 TMEM150A-207ENST00000431593 2323 ntTSL 221.71■■□□□ 1.077e-7■■□□□ 11.9
DDX55Q8NHQ9 GMPR2-207ENST00000558007 469 ntTSL 220.63■□□□□ 0.897e-7■■□□□ 11.9
DDX55Q8NHQ9 GMPR2-211ENST00000558748 657 ntTSL 320.25■□□□□ 0.837e-7■■□□□ 11.9
DDX55Q8NHQ9 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.657e-7■■□□□ 11.9
DDX55Q8NHQ9 GMPR2-209ENST00000558483 857 ntTSL 318.88■□□□□ 0.617e-7■■□□□ 11.9
DDX55Q8NHQ9 TMEM150A-212ENST00000463363 776 ntTSL 213.2□□□□□ -0.37e-7■■□□□ 11.9
DDX55Q8NHQ9 GMPR2-225ENST00000559943 360 ntTSL 311.13□□□□□ -0.637e-7■■□□□ 11.9
DDX55Q8NHQ9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.97■■■□□ 2.714e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC24.95■■□□□ 1.584e-6■■□□□ 11.9
DDX55Q8NHQ9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.84e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.464e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-220ENST00000513100 557 ntTSL 416.88■□□□□ 0.294e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-218ENST00000509427 587 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.044e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-208ENST00000453526 559 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.24e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-212ENST00000505864 701 ntTSL 313.14□□□□□ -0.314e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-215ENST00000508161 475 ntTSL 313.14□□□□□ -0.314e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-213ENST00000507032 311 ntTSL 512.73□□□□□ -0.374e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-203ENST00000395634 1468 ntTSL 2 BASIC11.38□□□□□ -0.594e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-219ENST00000509979 771 ntTSL 4 BASIC10.37□□□□□ -0.754e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-223ENST00000515855 801 ntTSL 4 BASIC8.53□□□□□ -1.044e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC6.98□□□□□ -1.294e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-210ENST00000503429 1079 ntTSL 1 (best)6.83□□□□□ -1.324e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-221ENST00000513684 503 ntTSL 55.83□□□□□ -1.484e-6■■□□□ 11.9
DDX55Q8NHQ9 NREP-214ENST00000507742 577 ntTSL 25.1□□□□□ -1.594e-6■■□□□ 11.9
DDX55Q8NHQ9 MYL6B-203ENST00000548571 223 ntTSL 410.85□□□□□ -0.672e-19■■□□□ 11.9
DDX55Q8NHQ9 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.385e-7■■□□□ 11.9
DDX55Q8NHQ9 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC15.33■□□□□ 0.045e-7■■□□□ 11.9
DDX55Q8NHQ9 SNRPD2-207ENST00000588599 805 ntTSL 3 BASIC14.19□□□□□ -0.145e-7■■□□□ 11.9
DDX55Q8NHQ9 SNRPD2-204ENST00000587367 596 ntTSL 3 BASIC13.4□□□□□ -0.265e-7■■□□□ 11.9
DDX55Q8NHQ9 SNRPD2-202ENST00000391932 615 ntTSL 2 BASIC12.93□□□□□ -0.345e-7■■□□□ 11.9
DDX55Q8NHQ9 SNRPD2-201ENST00000342669 901 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.395e-7■■□□□ 11.9
DDX55Q8NHQ9 SNRPD2-208ENST00000590212 454 ntTSL 3 BASIC12.45□□□□□ -0.425e-7■■□□□ 11.9
DDX55Q8NHQ9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.364e-7■■□□□ 11.9
DDX55Q8NHQ9 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC29.02■■■□□ 2.244e-7■■□□□ 11.9
DDX55Q8NHQ9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC27.07■■□□□ 1.924e-7■■□□□ 11.9
DDX55Q8NHQ9 HNRNPM-207ENST00000597081 1004 ntTSL 525.79■■□□□ 1.724e-7■■□□□ 11.9
DDX55Q8NHQ9 HNRNPM-208ENST00000597270 1147 ntTSL 225.36■■□□□ 1.654e-7■■□□□ 11.9
DDX55Q8NHQ9 PTGES2-212ENST00000496594 2103 ntTSL 523.98■■□□□ 1.434e-7■■□□□ 11.9
DDX55Q8NHQ9 PTOV1-213ENST00000600105 635 ntTSL 323.94■■□□□ 1.427e-12■■□□□ 11.9
DDX55Q8NHQ9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.344e-7■■□□□ 11.9
DDX55Q8NHQ9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC23.11■■□□□ 1.294e-7■■□□□ 11.9
DDX55Q8NHQ9 PTOV1-203ENST00000594165 986 ntTSL 323.03■■□□□ 1.281e-11■■□□□ 11.9
DDX55Q8NHQ9 PTGES2-211ENST00000493205 1514 ntTSL 522.83■■□□□ 1.254e-7■■□□□ 11.9
DDX55Q8NHQ9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.114e-7■■□□□ 11.9
DDX55Q8NHQ9 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC21.37■■□□□ 1.014e-7■■□□□ 11.9
DDX55Q8NHQ9 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC21.11■□□□□ 0.974e-7■■□□□ 11.9
DDX55Q8NHQ9 PTGES2-205ENST00000476655 1063 ntTSL 319.95■□□□□ 0.784e-7■■□□□ 11.9
DDX55Q8NHQ9 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.64e-7■■□□□ 11.9
DDX55Q8NHQ9 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.83■□□□□ 0.444e-7■■□□□ 11.9
DDX55Q8NHQ9 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.24■□□□□ 0.354e-7■■□□□ 11.9
DDX55Q8NHQ9 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.21■□□□□ 0.354e-7■■□□□ 11.9
DDX55Q8NHQ9 TUBB3-209ENST00000555609 1855 ntTSL 316.82■□□□□ 0.284e-7■■□□□ 11.9
DDX55Q8NHQ9 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC16.73■□□□□ 0.274e-7■■□□□ 11.9
DDX55Q8NHQ9 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.24e-7■■□□□ 11.9
DDX55Q8NHQ9 SEC11C-201ENST00000299714 727 ntTSL 516.22■□□□□ 0.194e-7■■□□□ 11.9
DDX55Q8NHQ9 PTOV1-215ENST00000600793 426 ntTSL 515.51■□□□□ 0.074e-7■■□□□ 11.9
DDX55Q8NHQ9 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.054e-7■■□□□ 11.9
DDX55Q8NHQ9 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.014e-7■■□□□ 11.9
DDX55Q8NHQ9 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.036e-17■■□□□ 11.9
DDX55Q8NHQ9 LSS-210ENST00000491729 2143 ntTSL 214.86□□□□□ -0.034e-7■■□□□ 11.9
DDX55Q8NHQ9 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.14e-7■■□□□ 11.9
DDX55Q8NHQ9 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.114e-7■■□□□ 11.9
DDX55Q8NHQ9 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.134e-7■■□□□ 11.9
DDX55Q8NHQ9 PRPF40A-202ENST00000410080 8048 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.456e-17■■□□□ 11.9
DDX55Q8NHQ9 LSS-203ENST00000419093 517 ntTSL 311.59□□□□□ -0.554e-7■■□□□ 11.9
DDX55Q8NHQ9 LSS-208ENST00000474319 3601 ntTSL 211.21□□□□□ -0.614e-7■■□□□ 11.9
DDX55Q8NHQ9 ENC1-204ENST00000509284 571 ntTSL 411.1□□□□□ -0.634e-7■■□□□ 11.9
DDX55Q8NHQ9 PLXNB1-219ENST00000497627 317 ntTSL 310.85□□□□□ -0.674e-7■■□□□ 11.9
DDX55Q8NHQ9 AC135048.1-202ENST00000562642 626 ntTSL 39.43□□□□□ -0.94e-7■■□□□ 11.9
DDX55Q8NHQ9 SEC11C-206ENST00000591406 462 ntTSL 26.06□□□□□ -1.444e-7■■□□□ 11.9
DDX55Q8NHQ9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.54e-7■■□□□ 11.9
DDX55Q8NHQ9 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.434e-7■■□□□ 11.9
DDX55Q8NHQ9 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.554e-7■■□□□ 11.9
DDX55Q8NHQ9 ARL2-206ENST00000533729 795 ntTSL 5 BASIC12.94□□□□□ -0.344e-7■■□□□ 11.9
DDX55Q8NHQ9 CRLF1-203ENST00000594325 1020 ntTSL 327.84■■■□□ 2.056e-11■■□□□ 11.9
DDX55Q8NHQ9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.016e-11■■□□□ 11.9
DDX55Q8NHQ9 CRLF1-204ENST00000596360 413 ntTSL 219.45■□□□□ 0.76e-11■■□□□ 11.9
Retrieved 100 of 15,504 protein–RNA pairs in 159.3 ms