Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 AC092338.2-201ENST00000568827 1415 ntBASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 FAM8A6P-201ENST00000407496 1135 ntBASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 AP000550.4-202ENST00000639755 178 ntBASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.29■□□□□ 0.68
HDDC3Q8N4P3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 AL353719.1-201ENST00000566847 864 ntBASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 AC139887.4-201ENST00000607877 719 ntBASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDDC3Q8N4P3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 KRT18P48-201ENST00000434763 852 ntBASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 CA15P1-201ENST00000481698 905 ntBASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 AL121894.2-201ENST00000602977 491 ntBASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDDC3Q8N4P3 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.27■□□□□ 0.67
HDDC3Q8N4P3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
HDDC3Q8N4P3 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.27■□□□□ 0.67
HDDC3Q8N4P3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HDDC3Q8N4P3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 KRT8P11-201ENST00000409686 1436 ntBASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms