Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AP006294.2-201ENST00000641667 209 ntBASIC18.82■□□□□ 0.6
VRK3Q8IV63 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 RCC2P6-201ENST00000526625 1557 ntBASIC18.81■□□□□ 0.6
VRK3Q8IV63 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 MESTP1-201ENST00000404287 994 ntBASIC18.81■□□□□ 0.6
VRK3Q8IV63 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 TSPY7P-201ENST00000431358 1114 ntBASIC18.81■□□□□ 0.6
VRK3Q8IV63 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 AC011506.1-201ENST00000474329 610 ntBASIC18.81■□□□□ 0.6
VRK3Q8IV63 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 AL031985.4-201ENST00000642138 673 ntBASIC18.81■□□□□ 0.6
VRK3Q8IV63 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.81■□□□□ 0.6
VRK3Q8IV63 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VRK3Q8IV63 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VRK3Q8IV63 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VRK3Q8IV63 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.8■□□□□ 0.6
VRK3Q8IV63 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.8■□□□□ 0.6
VRK3Q8IV63 AC091390.4-202ENST00000476426 537 ntBASIC18.8■□□□□ 0.6
VRK3Q8IV63 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.8■□□□□ 0.6
VRK3Q8IV63 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.8■□□□□ 0.6
VRK3Q8IV63 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.8■□□□□ 0.6
VRK3Q8IV63 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK3Q8IV63 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 AL049812.1-201ENST00000432563 2267 ntBASIC18.79■□□□□ 0.6
VRK3Q8IV63 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 MIR718-201ENST00000390190 70 ntBASIC18.79■□□□□ 0.6
VRK3Q8IV63 AC093827.2-201ENST00000512654 315 ntBASIC18.79■□□□□ 0.6
VRK3Q8IV63 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 AP001412.1-201ENST00000608405 714 ntBASIC18.79■□□□□ 0.6
VRK3Q8IV63 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.79■□□□□ 0.6
VRK3Q8IV63 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK3Q8IV63 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 TSPY23P-201ENST00000440136 739 ntBASIC18.78■□□□□ 0.6
VRK3Q8IV63 SNORA78-201ENST00000459373 127 ntBASIC18.78■□□□□ 0.6
VRK3Q8IV63 B3GAT3P1-201ENST00000471720 806 ntBASIC18.78■□□□□ 0.6
VRK3Q8IV63 NUDT16P1-203ENST00000513809 620 ntBASIC18.78■□□□□ 0.6
VRK3Q8IV63 AC026271.3-201ENST00000571884 352 ntBASIC18.78■□□□□ 0.6
VRK3Q8IV63 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 MIR6786-201ENST00000616843 113 ntBASIC18.78■□□□□ 0.6
VRK3Q8IV63 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms