Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.63□□□□□ -0.07
HLA-DMBP28068 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-DMBP28068 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DMBP28068 CROCCP3-202ENST00000420820 1947 ntBASIC14.62□□□□□ -0.07
HLA-DMBP28068 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 REXO2-208ENST00000539754 791 ntTSL 2 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 AC006333.2-201ENST00000607957 2099 ntBASIC14.62□□□□□ -0.07
HLA-DMBP28068 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-DMBP28068 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC14.62□□□□□ -0.07
HLA-DMBP28068 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 POU5F1P3-201ENST00000428824 1078 ntBASIC14.61□□□□□ -0.07
HLA-DMBP28068 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 PNN-205ENST00000556530 601 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-DMBP28068 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HLA-DMBP28068 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms