Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.39■□□□□ 0.37
SSX4O60224 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.39■□□□□ 0.37
SSX4O60224 AL359736.2-201ENST00000621992 437 ntBASIC17.39■□□□□ 0.37
SSX4O60224 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SSX4O60224 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SSX4O60224 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.39■□□□□ 0.37
SSX4O60224 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
SSX4O60224 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SSX4O60224 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
SSX4O60224 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SSX4O60224 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.39■□□□□ 0.37
SSX4O60224 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SSX4O60224 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.39■□□□□ 0.37
SSX4O60224 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.38■□□□□ 0.37
SSX4O60224 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SSX4O60224 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.38■□□□□ 0.37
SSX4O60224 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SSX4O60224 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.38■□□□□ 0.37
SSX4O60224 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.38■□□□□ 0.37
SSX4O60224 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SSX4O60224 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
SSX4O60224 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SSX4O60224 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SSX4O60224 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.38■□□□□ 0.37
SSX4O60224 UBE2SP1-201ENST00000450587 669 ntBASIC17.38■□□□□ 0.37
SSX4O60224 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
SSX4O60224 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 C1QBPP2-201ENST00000528754 825 ntBASIC17.38■□□□□ 0.37
SSX4O60224 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.38■□□□□ 0.37
SSX4O60224 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.38■□□□□ 0.37
SSX4O60224 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
SSX4O60224 AC139713.2-201ENST00000641328 2723 ntBASIC17.38■□□□□ 0.37
SSX4O60224 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SSX4O60224 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.37■□□□□ 0.37
SSX4O60224 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.37■□□□□ 0.37
SSX4O60224 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SSX4O60224 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.37■□□□□ 0.37
SSX4O60224 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.37■□□□□ 0.37
SSX4O60224 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SSX4O60224 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.37■□□□□ 0.37
SSX4O60224 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.37■□□□□ 0.37
SSX4O60224 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.37■□□□□ 0.37
SSX4O60224 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.37■□□□□ 0.37
SSX4O60224 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.37■□□□□ 0.37
SSX4O60224 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SSX4O60224 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.37■□□□□ 0.37
SSX4O60224 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
SSX4O60224 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 AC020763.4-201ENST00000623414 4170 ntBASIC17.37■□□□□ 0.37
SSX4O60224 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 CYP21A1P-202ENST00000354927 1481 ntBASIC17.37■□□□□ 0.37
SSX4O60224 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.37■□□□□ 0.37
SSX4O60224 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SSX4O60224 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SSX4O60224 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.36■□□□□ 0.37
SSX4O60224 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 AC099398.1-201ENST00000567919 2776 ntBASIC17.36■□□□□ 0.37
SSX4O60224 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.36■□□□□ 0.37
SSX4O60224 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.36■□□□□ 0.37
SSX4O60224 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.36■□□□□ 0.37
SSX4O60224 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.36■□□□□ 0.37
SSX4O60224 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SSX4O60224 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.36■□□□□ 0.37
SSX4O60224 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.36■□□□□ 0.37
SSX4O60224 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.36■□□□□ 0.37
SSX4O60224 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.36■□□□□ 0.37
SSX4O60224 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.36■□□□□ 0.37
SSX4O60224 AC008550.1-201ENST00000511500 884 ntBASIC17.36■□□□□ 0.37
SSX4O60224 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.36■□□□□ 0.37
SSX4O60224 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.36■□□□□ 0.37
SSX4O60224 SOX15-203ENST00000570788 1093 ntBASIC17.36■□□□□ 0.37
SSX4O60224 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.36■□□□□ 0.37
SSX4O60224 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.36■□□□□ 0.37
SSX4O60224 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SSX4O60224 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
SSX4O60224 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms