Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ANKRD18DP-204ENST00000455355 1975 ntBASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 AC073508.3-201ENST00000619697 1419 ntBASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 HMGA1P5-201ENST00000412453 271 ntBASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 SLC25A1P2-201ENST00000430693 912 ntBASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 RBM42-202ENST00000586618 771 ntTSL 3 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 KRT8P41-201ENST00000533985 1514 ntBASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV40A0A0B4J280 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 GPX4-207ENST00000589115 812 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV40A0A0B4J280 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 ARMC10P1-201ENST00000313754 855 ntBASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 DUX4L26-201ENST00000489078 1255 ntBASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms