Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 AL121603.2-201ENST00000557373 2117 ntBASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 DPP3P2-201ENST00000416030 1696 ntBASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.34■■□□□ 1.33
ZC3H4Q9UPT8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 AC079776.4-201ENST00000511039 504 ntBASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 TPSP2-201ENST00000561760 610 ntBASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
ZC3H4Q9UPT8 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC23.33■■□□□ 1.32
ZC3H4Q9UPT8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
ZC3H4Q9UPT8 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
ZC3H4Q9UPT8 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
ZC3H4Q9UPT8 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC23.33■■□□□ 1.32
ZC3H4Q9UPT8 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
ZC3H4Q9UPT8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC23.33■■□□□ 1.32
ZC3H4Q9UPT8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC23.33■■□□□ 1.32
ZC3H4Q9UPT8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 AL162741.1-201ENST00000565563 1558 ntBASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 CIB2-208ENST00000560618 804 ntTSL 2 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 HLA-A-201ENST00000376802 1334 ntBASIC23.32■■□□□ 1.32
ZC3H4Q9UPT8 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 MRPL3P1-201ENST00000400109 1033 ntBASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC23.31■■□□□ 1.32
ZC3H4Q9UPT8 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
ZC3H4Q9UPT8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
ZC3H4Q9UPT8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC23.3■■□□□ 1.32
ZC3H4Q9UPT8 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
ZC3H4Q9UPT8 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
ZC3H4Q9UPT8 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC23.3■■□□□ 1.32
ZC3H4Q9UPT8 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
ZC3H4Q9UPT8 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms