Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCX3AQ9NNX9 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 ABHD17AP5-201ENST00000580133 923 ntBASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VCX3AQ9NNX9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 AC006333.2-201ENST00000607957 2099 ntBASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 AC245052.3-201ENST00000450182 901 ntBASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCX3AQ9NNX9 AC116050.2-201ENST00000612102 1779 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 TSPY9P-201ENST00000440215 945 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 TSPY11P-201ENST00000442607 1045 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 MIR4787-201ENST00000607364 84 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 MIR6724-1-201ENST00000616420 92 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 MIR6724-2-201ENST00000616483 92 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 MIR6724-4-201ENST00000617390 92 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 MIR6724-3-201ENST00000622482 92 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 KRT8P36-201ENST00000489121 1440 ntBASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.96■□□□□ 0.47
VCX3AQ9NNX9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
VCX3AQ9NNX9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms