Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.27■□□□□ 0.67
LRFN3Q9BTN0 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN3Q9BTN0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 AC145285.3-201ENST00000564603 959 ntBASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 FAM215A-202ENST00000632077 792 ntBASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN3Q9BTN0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 AL355877.3-201ENST00000622820 899 ntBASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 AC104109.2-201ENST00000602919 1418 ntBASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LRFN3Q9BTN0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 SEC1P-202ENST00000473944 940 ntBASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 NSUN5P1-202ENST00000421140 1535 ntBASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 NSUN5P2-203ENST00000457352 1529 ntBASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.23■□□□□ 0.67
LRFN3Q9BTN0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 TMEM179-206ENST00000616017 1645 ntBASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 AL591424.1-201ENST00000442569 1213 ntBASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.22■□□□□ 0.67
LRFN3Q9BTN0 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms